Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 201 9e-47 >seq7 Length=1057013 Score = 201 bits (222), Expect = 9e-47 Identities = 408/602 (68%), Gaps = 8/602 (1%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| |||||||| || ||| ||||| | ||| | |||||||||| |||||| Sbjct 915519 TTTCCATTATTAACAACAAAAAAATTATTTGTAAGAGGTATCATTGAAGAGTTGTTATGG 915578 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||| | ||| ||||||| | || |||||||| || | || ||| Sbjct 915579 TTTATAAGGGGAGAAACAAATGGAAATACACTATTAGAAAAAAATGTAAGAATATGGGAA 915638 Query 20164 GCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGGGG 20220 || |||| | | | |||||| | | | || |||| | | | ||| Sbjct 915639 GCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTTCATA---GAGAAGTTAAT 915695 Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 || || ||||| | || |||||||||||||| || ||||| ||||||||| || ||| Sbjct 915696 GACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATATG 915755 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT-AA 20339 | | ||||| | |||| || |||||| || ||||| |||| ||||||||| || Sbjct 915756 CATGCTGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAAA 915815 Query 20340 AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 ||||| || | | | ||| ||||||||||||| || ||||| | |||||| | | Sbjct 915816 AACGATCCGACATG-TAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCA 915874 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| || || || |||||||| |||| |||||||| ||| | || |||| || Sbjct 915875 AATGGCATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATC 915934 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||| ||||||||| |||| |||| | || || |||||||| ||||||||||| Sbjct 915935 ATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTC 915994 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGT 20579 ||| | | |||| |||||||| ||||| || ||||| || | | ||| || | Sbjct 915995 CTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTAT 916054 Query 20580 CCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTT 20639 || | ||| | || ||| |||| ||||||| | ||| |||||| | ||||| Sbjct 916055 TCATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTAAAAGTTCAGTT 916114 Query 20640 AA 20641 || Sbjct 916115 AA 916116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180784198645