Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 396 3e-105 seq10 172 7e-38 >seq6 Length=831307 Score = 396 bits (438), Expect = 3e-105 Identities = 968/1455 (67%), Gaps = 23/1455 (2%) Strand=Plus/Minus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | || | | | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGT 62597 |||| ||||||| |||| | ||| || | ||||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCTCA 62654 | || || | || || | || | ||| ||||| ||||||||||| || ||| | Sbjct 424256 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 424200 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTATT 62713 || | || | | | ||||| ||| | ||||| || |||||||| || ||||| ||| Sbjct 424199 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 424141 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || |||| ||||| ||| ||||||| |||| || ||||| | || ||||| Sbjct 424140 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 424081 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 |||||| || || || || ||||||||||| || ||||| || ||||||||||| || Sbjct 424080 TCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAAC 424021 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 ||||||||||| | || |||||||||| | |||||| ||| | ||| | ||| Sbjct 424020 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 423961 Query 62894 CTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAAC 62947 | | ||| ||||| ||| | ||||| ||||| || ||||||| Sbjct 423960 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 423901 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 || || | |||||| || ||||| |||| || | ||||| || || ||| || Sbjct 423900 GGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACA 423841 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 | ||||||||| || || ||||||||||||| ||| || || ||||| ||||| Sbjct 423840 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATC 423781 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||||| | || |||| ||||||||| || || || || || || ||| | Sbjct 423780 TTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 423721 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCG 63187 || | || | | | |||| | ||||| ||||||| ||||| ||| Sbjct 423720 ATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAATTT 423661 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || |||||| | || | |||||||||| || ||||| || | Sbjct 423660 TTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGT 423601 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| ||| Sbjct 423600 CCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAA 423541 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || ||| | | ||| ||| || || || ||| ||| | | ||| | || | | Sbjct 423540 TAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAA 423481 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 |||||| |||||||| ||||| | |||| || | | || | ||| ||| || Sbjct 423480 AATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACC 423421 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||||| ||||| || || | |||| ||||||| |||||||||| | ||| ||||| Sbjct 423420 TTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGA 423361 Query 63488 TATACCATTGGTACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTGATAGA 63545 ||||||||| || || ||| | || | || | | ||||| | | | | Sbjct 423360 TATACCATTAGTTCCTCTGATGTAAGAAT--TTTGACCTCTAATATCTTGTACAGCCACA 423303 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 ||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || ||| Sbjct 423302 CCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCT 423243 Query 63606 TCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||||| |||| ||| || ||| || ||| || |||||||||| | | | || Sbjct 423242 TCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGT 423184 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 ||||| ||||||||| ||||||| ||| || ||||| |||||| || | || || || Sbjct 423183 TCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGATA 423124 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || || | ||| || | ||| | ||| ||||||| | || | |||||| | Sbjct 423123 TGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAA 423064 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || ||||| | ||||| |||||| || || || || ||||| || |||| || || Sbjct 423063 ATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGT 423004 Query 63845 TTTAAAACCAAAATA 63859 |||||| |||||||| Sbjct 423003 TTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 172 bits (190), Expect = 7e-38 Identities = 366/541 (68%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || ||||||||||| ||||| ||| ||| || | || | | | | ||| Sbjct 1394443 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1394384 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| ||||||||| | | || ||| ||| || |||||||| || ||| Sbjct 1394383 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1394324 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 1394323 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 1394264 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1394263 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1394204 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || ||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1394203 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1394144 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| | || || | | || || | || || |||||| | ||||| | || Sbjct 1394143 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT-TACT 1394085 Query 33963 -GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| |||||||||||||| ||||||||||| || | ||||||||||| Sbjct 1394084 AGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTAT 1394025 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCCA 34080 ||||| ||||| | | ||| ||| ||| || || || | ||| | |||| ||| | Sbjct 1394024 AAAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 1393966 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 1393965 TTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 1393906 Query 34141 A 34141 | Sbjct 1393905 A 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812396132080