Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 592 2e-164 seq10 280 1e-70 >seq6 Length=831307 Score = 592 bits (656), Expect = 2e-164 Identities = 1188/1736 (68%), Gaps = 44/1736 (3%) Strand=Plus/Minus Query 36958 TCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGT 37017 || || ||||| || | |||| |||||| || |||||||| |||||||| | | | Sbjct 424652 TCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCCCAAACGGTTTTATACAACTCT 424593 Query 37018 TTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAACCATTATGTAACAC-AATTGT 37073 || | | | |||| || ||| || ||||| | |||||||| | |||||| Sbjct 424592 TTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTTCCATTATGGGCAATTAATTGT 424533 Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATT 37133 | || || || | || ||| | | |||| | || ||| | || | || ||||| Sbjct 424532 TGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAGATCTTTTAACAAATGAGGATT 424474 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 || || || || ||| ||| || | ||| ||| || || || ||||||||||| Sbjct 424473 AACGACAAAGAATTCACCACTTAAAACACGTCTGTAATAAATGTTACTTGTATATGGTTC 424414 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 || ||| |||||||| | ||| ||||| || || || || || ||||| ||||||| || Sbjct 424413 AAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTGCTAAAAG 424354 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| |||||| ||||||||| || | ||| | ||||||| | || ||||||||| | Sbjct 424353 AAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATCCCAATCCCA-AT 424295 Query 37314 ATCTGTTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAG 37369 || | || | |||| | ||||||||| |||||| || |||| || |||||| Sbjct 424294 ATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGAC 424235 Query 37370 AATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTA 37426 | | | ||||| ||||| ||||| | || || | ||| ||| ||| ||||| Sbjct 424234 TACCTTGATATGATTCATATGGTCCACTTACTTGTGCCAATTC--AAC-AGACATTTCTA 424178 Query 37427 GTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTAT 37486 || |||||||| || ||||| || ||| | |||||||| ||| |||||||| | Sbjct 424177 AAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATT 424118 Query 37487 CGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGG 37546 | ||| ||| | || | ||||| ||| || || || || || || || || || | Sbjct 424117 CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAG 424058 Query 37547 GTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTA 37606 ||||||| | ||||| ||||| | |||| | |||||||||||||| | || || | Sbjct 424057 GTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAACTGGATAATAATTTCTTTCAATAA 423998 Query 37607 TTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAAT 37665 |||||| || |||| || | ||||| ||||| || | | || | || || |||| Sbjct 423997 TTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATCATATAATTTTTTAAAATTAAAT 423939 Query 37666 ACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 | || || || ||||||||| | || | ||| || ||| |||||| ||||| Sbjct 423938 TCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGACGCTAAATTACAAACAGCT 423879 Query 37720 ACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| || | || ||| ||||| || ||| | |||||| || ||||||| Sbjct 423878 ACTTCATCAG-GTGATGTATATTCAATAATTTCACAACATAAATTACTACATTTAATTGT 423820 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 ||| ||||| |||| || ||||| |||||| | ||||||||||| ||||| || Sbjct 423819 TCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTAC 423760 Query 37839 TCCTTGTTCTATTTGAGCCTCGATA-ATAGATTTCCATAAACTTCTTGCTTTAACGATCG 37897 || ||||||||| || | | | |||| ||||||| | ||| ||| | Sbjct 423759 ACCAGTTTCTATTTG-GCTTTGTAATATAGCAAACCATAAATCTTGTGCAAGAACTGTTT 423701 Query 37898 CTTT-----AAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCC 37952 ||| |||||| ||||| |||||| | |||||||||| | ||| || | || Sbjct 423700 TTTTGCCTAAATTTTCTTCTT-----CGTATTTTGTATATAATTTTTCAAATTCTTCACC 423646 Query 37953 CCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA-TTCTTCATCTT 38011 ||| || | ||| ||||||||||| || ||||||| || ||| ||||| || || Sbjct 423645 CCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTT-ATTTT 423587 Query 38012 TTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTC 38071 | ||| | || ||||||||||||||||||||| | ||| ||||||||| | || Sbjct 423586 CCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTC 423527 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCC 38131 | ||||||| || || ||| |||||||| || ||| || || ||||| | |||| Sbjct 423526 TCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCC 423467 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 ||||||| | ||| | | | | ||| |||||| | || || |||| | ||||| Sbjct 423466 ATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATC 423407 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | |||| | |||| | | ||||||||| || |||| |||||| ||| | || || | | Sbjct 423406 TTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTAGTTC 423347 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 | || |||| | | | ||| |||| || | || ||||| || ||||| | Sbjct 423346 CTCTGATGTAAGAATTTTGACCTCTAATATCTTGTACAGCCACACCTATACCTCCTGC-T 423288 Query 38312 GTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC 38370 ||||| | || || || ||||| ||||| || ||||||||||||||||| ||| Sbjct 423287 GTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGAT 423228 Query 38371 TTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || |||| || || ||| || ||||||||| || ||| ||||| | ||||||||| Sbjct 423227 TTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAAT 423168 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 ||||||| ||||| | || |||||| |||| ||| ||||||||||| | | Sbjct 423167 GTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGATATGTTTCTAAAGCCTTT 423108 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || | |||| | || || |||| |||||| ||||||| | |||||| || | ||| Sbjct 423107 TCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGGACGTTCA 423048 Query 38551 ATTATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 || ||||||||||| | ||| || || || ||||||||||||| | ||||||||| Sbjct 423047 ATAATTTTATTATTAATACGTAA-TAAGTAAGACCTTTCTAATGTTTTAAATCCAAAATA 422989 Query 38610 ACTATATGAATAATCTCTATCGTATGCTATTACATTATCGATTATATCTCTATGTT 38665 | ||| | ||||||| || ||||| | |||| | |||| |||||| Sbjct 422988 ATCATAATTAAAATCTCTTGTATAATCTATTTCTTTATTTAAACGATCTTTATGTT 422933 >seq10 Length=1513010 Score = 280 bits (310), Expect = 1e-70 Identities = 593/869 (68%), Gaps = 18/869 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| ||| || ||||| || || |||| || ||||| | Sbjct 1394755 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1394696 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||| ||||| | | || ||| ||||| ||||||||| | |||| Sbjct 1394695 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAAT 1394636 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| ||| || || ||||| || || |||||||| | | ||||||| || || | | Sbjct 1394635 AATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 1394576 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATTA 11576 || || | || | | |||| || | | |||||| | ||| || || | | || Sbjct 1394575 TCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1394518 Query 11577 TCGACGTT--ATAACTTCCTTAGATGGTGGATGTAATA--AATGTTTAAACATTAAACAC 11632 | | || | ||| || | | | | || | | || | |||| |||| || Sbjct 1394517 T--ATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCTATAAA--TTAAGCAA 1394462 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||| ||||| ||||| |||||||| || | ||||||| ||||||||| || Sbjct 1394461 TTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCA 1394402 Query 11693 GGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 | | | || | ||||||| | ||||||||| ||| ||| ||| ||| ||||| Sbjct 1394401 TGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATAT 1394343 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCA 11811 ||| || ||| |||| ||||| | |||||| || | || | | |||||| Sbjct 1394342 TCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCA 1394283 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| ||||| ||||| ||||||| | || |||| ||||| | |||||| Sbjct 1394282 TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAA 1394223 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 || | | | ||| | | ||| || | ||| |||| |||||||||||||| |||| || Sbjct 1394222 ATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGA 1394163 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTA 11990 || |||||||| | |||||||||||| |||| |||| | || || | | | ||| Sbjct 1394162 GTGTATATTTTCAACAGCTATTTGAAAAGCATA-AAACTTTTTGGCTTCAATTATTTGTA 1394104 Query 11991 CATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | || | ||||| || | |||||||| || ||| || |||||||||| ||||||| Sbjct 1394103 CTTCT-CTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1394045 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 |||||||| | |||||||||||| | ||||| | | | ||||||| || | || | Sbjct 1394044 AATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTTTTCAAAGTCTTTC 1393985 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 ||||| |||||||||||| ||||||| | |||||||| ||| | | || |||||| Sbjct 1393984 AAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAA 1393925 Query 12170 ATTTTCCAGATATCATGATACTTAATAGG 12198 | ||||| | ||| ||||| ||||||| Sbjct 1393924 AAATTCCATACTTCAGGATACATAATAGG 1393896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520928813840