Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 392 4e-104 seq10 187 3e-42 >seq6 Length=831307 Score = 392 bits (434), Expect = 4e-104 Identities = 968/1458 (66%), Gaps = 29/1458 (2%) Strand=Plus/Minus Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 || || ||||||||||| | | | | |||||| | || | | | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 65390 |||| ||||||| |||| | ||| | |||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 65391 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 65447 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 424256 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 424200 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 65506 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 424199 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 424141 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 424140 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 424083 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || ||||||||||| || ||||| || ||||||||||| | Sbjct 424082 AATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTA 424023 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 424022 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 423963 Query 65685 TCCTTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCA 65738 || | | ||| ||||| ||| | | ||||| ||||| || |||||| Sbjct 423962 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 423903 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 423902 ATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 423843 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | ||||||||| || || ||||||||||||| ||| || || ||||| ||| Sbjct 423842 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCA 423783 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 423782 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 423723 Query 65919 ACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 65978 | || | || | | | |||| | |||||| ||||||| |||||| ||| Sbjct 423722 AAATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAAT 423663 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 ||| || || || |||||| | || || |||||||||| || ||||| || Sbjct 423662 TTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAA 423603 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| | Sbjct 423602 GTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 423543 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 |||||||| | | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 423542 AATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 423483 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | |||||| ||||||| ||||| | |||| || | | || | ||| ||| Sbjct 423482 AAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 423423 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||||| ||||| || || | |||| ||||||| |||||||||| | |||||| Sbjct 423422 CCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 423363 Query 66279 GATGTACCATTGGTCCCGGAGAT---ATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||| ||||||| || || ||| | | || || | | ||||| | | Sbjct 423362 GATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCC 423306 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || Sbjct 423305 ACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATA 423246 Query 66396 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 423245 CCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGG 423187 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || || Sbjct 423186 TGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATG 423127 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || || | ||| || | ||| | ||| ||||||| | || | |||||| Sbjct 423126 ATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAA 423067 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 | || ||||| | ||||| || || || || || || ||||| || |||| || Sbjct 423066 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAA 423007 Query 66635 AGTTTTAAAACCAAAATA 66652 |||||||| |||||||| Sbjct 423006 TGTTTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 187 bits (206), Expect = 3e-42 Identities = 378/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 1394458 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 1394399 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1394398 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1394339 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||| || | || ||| || || || | | |||| |||||| || Sbjct 1394338 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 1394279 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1394278 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1394219 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 1394218 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 1394159 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 1394158 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 1394099 Query 36524 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 1394098 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1394040 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATAT 36641 | |||||||||||||||| ||||| ||| ||| ||| ||| || || || | || Sbjct 1394039 TAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1393981 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1393980 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1393921 Query 36702 TCCAGATGTCATGATA 36717 |||| | ||| |||| Sbjct 1393920 TCCATACTTCAGGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167361847240