Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 475 5e-129 seq10 181 2e-40 >seq6 Length=831307 Score = 475 bits (526), Expect = 5e-129 Identities = 989/1457 (68%), Gaps = 27/1457 (2%) Strand=Plus/Minus Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||| ||||| ||||||||||| | |||||||||||||| |||||||| | |||||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCT 79212 || |||||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 79213 TTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATTGT 79269 |||| | |||||||||||| | | || ||||||| | |||| ||||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 79270 AGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTTCG 79326 | || || | || || | | | | || |||| |||||| ||||| || ||| | Sbjct 424256 AATATTCCTTGGCTTGCTGGACTACCTTGA-TATGATTCATATGGTCCACTTACTTGT-- 424200 Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATT 79385 || |||||| | | ||||| || | ||||| || ||||| || || ||||| ||| Sbjct 424199 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 424141 Query 79386 GAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | |||| |||||| ||| ||||||| |||| || ||||| | |||||||| Sbjct 424140 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 424081 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 |||||| || || || || ||||||||||| || ||||| || ||||||||||| || Sbjct 424080 TCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAAC 424021 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACAT 79564 ||||||||||| | || |||||||||| | ||| || | || || ||| | | || Sbjct 424020 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATAT 423962 Query 79565 CCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGA 79618 | | || ||| ||||| ||| | | ||||| ||||| || || || | Sbjct 423961 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 423902 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || || | ||||||||| ||||| |||| || | ||||| || |||||| | Sbjct 423901 TGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 423842 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | | |||||||| ||||| ||||||||||||| ||| || || ||||| |||| Sbjct 423841 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCAT 423782 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | ||||| | || | || ||||||||| || || || || || || ||| | Sbjct 423781 CTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 423722 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 || | || | | | ||| | |||||| |||||||| |||||||||| Sbjct 423721 AATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAATT 423662 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 ||| || || || |||||| || ||| || |||||||| | ||| ||||| || | Sbjct 423661 TTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAG 423602 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 ||| | || |||||||||| ||||||||| | |||||| | ||||| ||| || Sbjct 423601 TCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAA 423542 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 ||| ||| | | ||| || || || || ||| ||| | | ||| | || | | Sbjct 423541 ATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAA 423482 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 |||||| |||||||| ||||| | |||| || | | || || ||| ||| | Sbjct 423481 AAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCAC 423422 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 | ||||||| ||||| || || | |||| ||||||| |||||||||| | |||||| | Sbjct 423421 CTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTG 423362 Query 80159 ATGTACCATTGGTCCCGGAGAT---ATAGCTTCCACTGGCACGAATATTACTAATTGATA 80215 || ||||||| || || ||| | | || || | | ||||| | | | Sbjct 423361 ATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCCA 423305 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | || | Sbjct 423304 CACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATAC 423245 Query 80276 CCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 423244 CTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGT 423186 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||||| ||||||||| ||||||| ||| || ||||| |||||| |||| || || Sbjct 423185 GTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGA 423126 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || | ||| ||| | ||| | ||| ||||||| | || | |||||| Sbjct 423125 TATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAAT 423066 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || ||||| | ||||| || || ||||| || || |||||||| |||| || Sbjct 423065 AAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAAT 423006 Query 80515 GTTTTAAAACCAAAATA 80531 |||||||| |||||||| Sbjct 423005 GTTTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 181 bits (200), Expect = 2e-40 Identities = 335/485 (69%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTCCTTCTACTGCGG 50095 ||||||| ||||||||| | | |||| || ||| ||| || |||||||| || | Sbjct 1394386 TTTTTAAACCAAAATATTG-CACAAAA-ACTTCCACTAAATAATATTCCTTCGACACATG 1394329 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 || || |||| ||| || || || | | |||| |||||| || ||||| Sbjct 1394328 CATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATA 1394269 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 || || ||||||| || || |||| || |||| ||| | || | | || | Sbjct 1394268 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTT 1394209 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 | ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1394208 TCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAA 1394149 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || ||||| | || || | | || || | || || |||||| | ||||| Sbjct 1394148 CAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATT 1394089 Query 50336 GTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 50395 |||||||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1394088 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1394029 Query 50396 TTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 50454 |||||||||| ||||| || ||| ||| ||| || || || | ||| | |||| | Sbjct 1394028 TTATAAAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1393970 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 |||| |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| Sbjct 1393969 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCA 1393910 Query 50515 TGATA 50519 |||| Sbjct 1393909 GGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262865304040