Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10 259 5e-64 >seq10 Length=1513010 Score = 259 bits (286), Expect = 5e-64 Identities = 627/934 (67%), Gaps = 29/934 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1394812 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1394753 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1394752 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1394693 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || ||||| |||||||| |||||||| Sbjct 1394692 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAATA-- 1394635 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||| |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| Sbjct 1394634 -ATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1394577 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| | | ||| || |||| | |||||| || || ||||| | | Sbjct 1394576 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1394518 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGC 13876 || || || || ||| | | | | |||||| || || ||||||| || Sbjct 1394517 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCCAGCAAGCTATAAATTAAGCAATT 1394460 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TG 13935 |||||| || | || |||||||||||||| | ||| || ||||||||| || || Sbjct 1394459 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 1394400 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 || || | ||||||| ||||||||||||||| ||| || ||| ||||||| Sbjct 1394399 TAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 1394341 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || || ||| |||| | || ||| |||| || | | || ||||| Sbjct 1394340 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCC 1394284 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| |||||| | ||| ||||| || || |||||||||||| ||||| Sbjct 1394283 ATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA 1394224 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||| | ||||||| | ||| || ||||||| | ||| ||||| |||||| Sbjct 1394223 AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAG 1394164 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 ||||||| ||||| | |||||| |||||| ||||||| | | ||||| ||||| Sbjct 1394163 AGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA 1394104 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| ||||| | || |||||||| ||||| ||||||||||||||||||| Sbjct 1394103 CTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAA 1394044 Query 14296 ATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGAGTTTTTTCCAATC 14350 |||| | | ||||||| |||| | |||| |||||| || | ||||| | || Sbjct 1394043 ATGCTAGCACATGTTTT--ATAA---AATGCTTTTCATTTACATTTAATTTTTCAAAGTC 1393989 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||| Sbjct 1393988 TTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTT 1393929 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||| | ||||| ||| ||| | |||||| Sbjct 1393928 ATAAAAATTCCATACTTCAGGATACATAATAGGA 1393895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724036247400