Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10 224 9e-54 >seq10 Length=1513010 Score = 224 bits (248), Expect = 9e-54 Identities = 620/932 (67%), Gaps = 25/932 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1394812 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1394753 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 1394752 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCC 1394693 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || ||||| |||||||| | ||||||| Sbjct 1394692 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAATAAT 1394633 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 | |||||||| ||| ||||| ||||||||||| || || ||||||| || |||| | Sbjct 1394632 CGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1394574 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | |||||| || || || || | ||| Sbjct 1394573 ACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATAT 1394515 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGCAAA 13667 | | || || || | | | | |||||| || || ||||||| || ||| Sbjct 1394514 TTTGAACAACCTCTTCTG--GTAATTTATTTTCCAGCAAGCTATAAATTAAGCAATTAAA 1394457 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 13726 ||| || | || |||||||||||||| | ||| || ||||||||| || || | Sbjct 1394456 ATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAA 1394397 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | || | ||||||| ||||||||||||||| || ||| ||| |||||||| | Sbjct 1394396 TTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTT 1394338 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 | || ||| |||| | || ||| |||| || | | | | || |||||||| Sbjct 1394337 CGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA-GTTCGTATCATT--TATCCATT 1394281 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | |||||| | ||| ||||| || || |||| || |||| ||||||| Sbjct 1394280 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAAT 1394221 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 | ||||||| | ||| || ||||||| | ||| ||||| ||||||||| Sbjct 1394220 TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGT 1394161 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 |||| ||||| | |||||| |||||| ||||||| | | ||||| ||||| || Sbjct 1394160 GTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA-CT 1394102 Query 14027 CCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 | ||||| || || || || ||||| || || ||||||||||||||||||||| Sbjct 1394101 TCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAAT 1394042 Query 14086 GCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGAGTTTTTTCCAATCGG 14140 || | | ||||||| |||| | |||| |||||| || | ||||| | || Sbjct 1394041 GCTAGCACATGTTTT--ATAA---AATGCTTTTCATTTACATTTAATTTTTCAAAGTCTT 1393987 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||||| | || | ||||| ||| ||| | |||||||| || |||||||||||| Sbjct 1393986 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1393927 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGA 14232 | | ||||| ||| ||| | |||||| Sbjct 1393926 AAAAATTCCATACTTCAGGATACATAATAGGA 1393895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584845660040