Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 423 3e-113 seq10 174 2e-38 >seq6 Length=831307 Score = 423 bits (468), Expect = 3e-113 Identities = 1003/1505 (67%), Gaps = 31/1505 (2%) Strand=Plus/Minus Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA---ATATTACT 71186 |||||||||||| || ||||| ||| || || ||| ||||| || ||||| Sbjct 424482 ATGAGGATTAACGACAAAGAATTCACCACTTAAAAC---ACGTCTGTAATAAATGTTACT 424426 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 ||||| ||||| | || ||||||||||| |||||||| | |||||| || || ||||| Sbjct 424425 TGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCAT 424366 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC 71306 |||||| | | ||| |||||| | |||||| | ||||| | ||||| | || Sbjct 424365 AGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTTTTTAATAAATC 424306 Query 71307 CCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 ||||| |||| | | || ||| | || || | Sbjct 424305 CCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTT 424247 Query 71363 TACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || || | | | | || ||||| || |||||||| | || || | |||| | Sbjct 424246 GGCTTGCTGGACTACCTTG-ATATGATTCATATGGTCCACTTACTTGTGCCAATTCAACA 424188 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 71480 | ||||| || ||||||| || ||||| || || ||||| ||| | |||| || Sbjct 424187 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 424129 Query 71481 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCC 71540 ||| ||| ||||||| |||| || ||||| | |||||||||||||| || || Sbjct 424128 TTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 424069 Query 71541 AATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 71600 || || |||||||| || || ||||| || ||||||||||| || ||||||||||| Sbjct 424068 TATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAACTGGATAATAATT 424009 Query 71601 AATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCTTTAGTTTGA 71659 | || |||||||||| | |||||| | || || ||| | | ||| | || ||| Sbjct 424008 TCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCATATAATTTTT 423950 Query 71660 GAAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||| ||| | | ||||| ||||| | || |||| || || | || Sbjct 423949 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGACGCTAAAT 423890 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 ||||||| ||||| |||| || | ||||| ||||||||| || | |||||||| Sbjct 423889 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 423830 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || || ||||||||||||| ||| || || ||||| ||||| ||||| | | Sbjct 423829 ATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATCTTTATATAACA 423770 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | || ||||||||| || || || || || || ||| | || | || Sbjct 423769 TATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 423710 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | | | || ||| | |||||| |||||||| |||||||||| ||| || || | Sbjct 423709 GAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCTT 423650 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 | ||||||| | ||| || ||||||||||| || ||||| || | ||| | || Sbjct 423649 CACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCTTAT 423590 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 72073 || ||||||| ||||||||| | |||||| | ||||| ||| ||||| ||| | | Sbjct 423589 TTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAG 423530 Query 72074 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 72133 ||| || || || || ||| ||| | | ||| | || | | |||||| |||| Sbjct 423529 CTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAAT 423470 Query 72134 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGT 72193 |||| ||||| | |||| || | | || | ||| ||| || ||||||| | Sbjct 423469 GCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACAT 423410 Query 72194 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 72253 |||| || || | |||| ||||||| |||||||||| | |||||| ||| |||||| | Sbjct 423409 ATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTAG 423350 Query 72254 TCCCGGAGAT---ATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCC 72310 | || ||| | | || || | | ||||| | | | |||||| || | Sbjct 423349 TTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCCACACCTATACCTC 423293 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 |||| ||||| || ||||| ||| | ||||| || ||| | || || ||||| || Sbjct 423292 CTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAAT 423233 Query 72371 CATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 72429 || ||| || ||| || ||| || |||||||||| | | ||||||| |||| Sbjct 423232 CAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTA 423174 Query 72430 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 72489 ||||| ||||||| ||| || ||||| |||||| |||| || || || || || | | Sbjct 423173 AATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGATATGTTTCTAAA 423114 Query 72490 GCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 || ||| | ||| | ||||||||||| | || | |||||| | ||| ||||| Sbjct 423113 GCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGGA 423054 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 | ||||| || || ||||| || || ||||| || |||| || |||||||| ||| Sbjct 423053 CGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCCA 422994 Query 72610 AAATA 72614 ||||| Sbjct 422993 AAATA 422989 >seq10 Length=1513010 Score = 174 bits (192), Expect = 2e-38 Identities = 364/540 (67%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || |||||||||||||| ||||| || ||| || | || | | | | ||| Sbjct 1394443 CCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTT 1394384 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 |||| ||||||||| | ||| |||| ||| || |||||||| || ||| Sbjct 1394383 TTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTA 1394324 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | || ||| || || || | | |||| |||||| || ||||| || Sbjct 1394323 GCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAATGCT 1394264 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 || ||||||| || || |||| || |||| ||| | || | | || || | Sbjct 1394263 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCA 1394204 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || ||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 1394203 TCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCT 1394144 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || ||||| | || || | |||| || | | ||||||||| | ||||| | Sbjct 1394143 ATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAATTTACTA 1394084 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 ||||||||||| |||||||| ||||| ||||||||||| || | |||||||||||| Sbjct 1394083 GCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATA 1394024 Query 42506 AAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTAC 42564 |||| ||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 1394023 AAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTAT 1393965 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| |||| Sbjct 1393964 TTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATACTTCAGGATA 1393905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133654712360