Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 147 2e-30 seq11 93.3 4e-14 >seq6 Length=831307 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | |||||||||||||| || |||||||| Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| |||||| | || | ||||||||||| || || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 381489 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 381430 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| ||||||||||| || ||||||||| || Sbjct 381429 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATACCT 381379 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | || ||||||||||| |||||||| || Sbjct 381381 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 381322 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| || ||| | || | | ||| ||||| ||||| Sbjct 381321 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 381262 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | || || | ||||| || Sbjct 381261 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACA 381202 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 381201 TCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 381151 Score = 89.7 bits (98), Expect = 5e-13 Identities = 685/1091 (63%), Gaps = 42/1091 (4%) Strand=Plus/Minus Query 156518 AAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGT 156577 ||||||||||| || | | ||||| | | |||||||| || || || || | Sbjct 424451 AAAACACGTCTGTAATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAA 424392 Query 156578 ATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTAT 156637 ||||||| || | || || ||||| || | ||| | ||||| | |||||| | | Sbjct 424391 ATTTGTGAAGTTGAAGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGT 424332 Query 156638 TTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGT---ATTC 156694 || ||| ||| |||| || ||| ||||| | | | ||| | |||| Sbjct 424331 TTACTTATTTTTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTC 424272 Query 156695 CACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGC 156754 |||| ||| |||| |||||||||| ||| ||| ||||| | | | ||| || Sbjct 424271 CACATATCAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGT 424212 Query 156755 TCACTAACAGATGCCAGTTCGTAACTGGCCT--CGAGCGCAGCATGATACACAGTTTCAG 156812 |||| || ||||| ||| ||| | | | | | ||||||| ||||| ||||||| Sbjct 424211 CCACTTACTTGTGCCAATTC--AACAGACATTTCTAAAGCAGCATAATACATAGTTTCAA 424154 Query 156813 CAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA----CGTACGG-TATGCGCAACAT 156867 ||| | |||| ||| | ||| || ||| | || || ||| | || | Sbjct 424153 ATATTCTTCTATTTAATT---CTTTAGCTTCT-TCAGATTCATATGGATAT-CTTAAAAG 424099 Query 156868 AACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGA 156927 | ||||| ||| || || ||||| | || || || || || | ||| | |||| || Sbjct 424098 CATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGA 424039 Query 156928 tttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCAC 156987 | ||| || || || || || |||| | ||||||||||||| ||| | || | Sbjct 424038 TCTTTCAGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATT-TCTAG 423980 Query 156988 TACATGTTTGACCACAGTG-TGCAATAGTTGAAAATCAAAAG------TATCATTATTGA 157040 || ||| | | | | ||| || ||||| ||| | || ||| | Sbjct 423979 TAATAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAA 423920 Query 157041 TATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAAT 157100 | |||| | ||||| ||||||| |||||| || || ||| || || | || Sbjct 423919 CAAATTTGCATAATGCAATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTAT 423860 Query 157101 ATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGC 157160 ||| | ||||| ||| ||||| || ||||| || ||| |||| |||| || Sbjct 423859 ATTCAATAATTTCACAACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCG 423800 Query 157161 TTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTT 157220 ||| || || || || || |||||||| || ||| || ||||| ||| ||| Sbjct 423799 ATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTT 423740 Query 157221 CTATGATGTTGCG---CATTAATGTAACCGCGGGCA---TTTGCTCGCGAAACTGGCCTT 157274 || || | || ||| ||| | || | | ||| | || || | ||| Sbjct 423739 GTA--ATATAGCAAACCATAAATCTTGT-GCAAGAACTGTTTTTTTGCCTAAATTTTCTT 423683 Query 157275 TATCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTA 157333 | ||||| | | | || | | |||||| || ||||| | || || || ||| | Sbjct 423682 ---CTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCT- 423627 Query 157334 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 157393 ||||| || ||||| |||||||| | ||| | ||||| | || | |||||||||| Sbjct 423626 GGACATTCATTAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAAT 423567 Query 157394 ATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 157453 | ||| || ||||| | ||| | | |||||||| ||| | ||||| | ||| Sbjct 423566 AAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGA 423507 Query 157454 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 157513 ||| | | | ||||| || | ||| || ||||||| |||||||| || || || Sbjct 423506 TTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCA 423447 Query 157514 TGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACT 157570 | ||||||| || ||||||||||| || | | | ||| |||||||||| Sbjct 423446 AAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACT 423387 Query 157571 CGCAGCATTGG 157581 | | |||||| Sbjct 423386 CTTAACATTGG 423376 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | |||||||||||||| || |||||||| Sbjct 381153 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381094 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| ||||| | || | | ||| ||||| || || Sbjct 381093 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 381034 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 381033 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 380974 Query 143138 TCAACAGT 143145 |||| ||| Sbjct 380973 TCAAGAGT 380966 >seq11 Length=1635978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || || |||||||| ||||| || || | ||| || ||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1474656 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1474715 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 1474716 CCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010210793520