Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 149 5e-31 seq11 120 2e-22 >seq6 Length=831307 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | ||| || |||||||| || |||||||| | Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| |||||||||||||||| ||||| | || || ||||| || || ||| Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| ||| || || |||| || ||||| ||| || Sbjct 381489 ATACCTTCTTTATCTTGAATTTTAGCT-TTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | ||||| ||||| || || | ||||||||||| ||||||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATA 381382 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||||||||| || | || || |||||||| |||||||| || | Sbjct 381381 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 381322 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| || || | || || | |||||| || ||| Sbjct 381321 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 381262 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| || ||| |||| ||||||||| ||| || Sbjct 381261 ATACCTTCTTTATCTTGGATTTTAGCT-TTAACATTTTCAATGGTATCGGATGGTTCAAC 381203 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || ||||| || || | ||||||||| ||||| |||||| Sbjct 381202 ATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCATA 381154 Score = 120 bits (132), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||||||||||||| || | ||| || |||||||| || |||||||| | Sbjct 381153 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381094 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || ||||||||||| |||||| | || || | |||||| || ||| Sbjct 381093 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 381034 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| ||| || || |||| || ||||| ||| || Sbjct 381033 ATACCTTCTTTATCTTGAATTTTAGCT-TTAACGTTTTCAATAGTATCTGATGGTTCAAC 380975 Query 15316 ATCTAAGGTAATGGTTTTACCTG 15338 ||| | ||||| ||||| |||| Sbjct 380974 ATCAAGAGTAATTGTTTTTCCTG 380952 >seq11 Length=1635978 Score = 120 bits (132), Expect = 2e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| ||||| || || || |||| | |||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 |||||||| |||||| | || || | |||||| || |||||||||||||| || Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || ||| |||| || ||||| ||| ||||| | || || ||||| Sbjct 1474656 ATTTTTGCT-TTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1474714 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA--TAAAATTTTAATACTT 15388 || || | ||||||||||| |||||||| || | ||| ||||| | |||| || Sbjct 1474715 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATT 1474771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176282307001