Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq554 187 7e-43 >seq554 Length=5135 Score = 187 bits (206), Expect = 7e-43 Identities = 386/572 (67%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 22461 CCTTTACCTACTTCGTCAGTTACTCGAACAACTTCTTTAAGGACCATGCTGCCCCAAGCA 22520 |||||||| ||||| || ||| | || ||||| | ||| || |||||||| ||||| ||| Sbjct 2105 CCTTTACCAACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCA 2164 Query 22521 TCACGTATATGGTCATCCATCCACTGAGATTGGCTACCAACAGCATTACTGAATTTAGTA 22580 || || || || || ||||||||| | || || ||| | ||| ||| |||| ||| Sbjct 2165 TCCCGAATTTGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTA 2224 Query 22581 ATCAATACCCTAACATCAGGCTCAAACCCGCCGAGGTCCAC--TCCAGCCATAAGATCAC 22638 | ||| | | ||||||||||| ||||| || || || || | | ||||||| Sbjct 2225 AGCAAAATACGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTG--AGCAGATCAC 2282 Query 22639 GCAACATAGTGAAAAATTGCAATGTGCTGACATAGTCATAAAGTTCAGCTGGAGTTGGTA 22698 | | |||| |||||| |||| || | | |||||| | | ||||| || || || | Sbjct 2283 GAAGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAA 2342 Query 22699 CAACAATGACATCAGCGGCACAAACCACATTTATTGTGCCTATGCCCAAGTTAGGTGCAC 22758 ||| | |||||||| ||||| || ||||| || ||||| || |||| |||||| || | Sbjct 2343 CAATCAGCACATCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGC 2402 Query 22759 TGTCTAAAACAACTACGTCATAGCTGTCCCATACGGACTCGATTGCAGCACGTAGCATCA 22818 |||| | ||| | || |||||| | || | || || || || ||||||| Sbjct 2403 TGTCAATAACTATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCA 2462 Query 22819 TGTGCGGTGCTACAGGGAGCTTTTCGGCATCA----TGCAAAGGATATAATTCAGACTCA 22874 ||| || | || || || | ||||| ||| | ||| |||| ||| Sbjct 2463 GGTGTGGATCGGTGGGCAGTTTACCTTCATCAAATTTGCCCA----TTAACTCAGTTTCA 2518 Query 22875 ATTCGATGGATGGCCAGACAGGATGGGATTATGTCCAGATTTGGCCAACATGTTGGTTTG 22934 || || || | ||||||||||| || || ||||| || ||||| || || || || Sbjct 2519 ATACGGTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTT 2578 Query 22935 ATGGCGTACATAGCATCATCACGTTCACCTAAGTAATAAGGGAGTAGAGTTTCGTCTTCG 22994 || || || | |||| || ||| || | || |||| || ||||| || ||| | Sbjct 2579 ATTGCATAAGTGACATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCA 2638 Query 22995 TGGATATGCAAATCAGGTACATACCCATGATA 23026 || ||||| | ||| ||||| | || ||||| Sbjct 2639 TGAATATGAAGATCTGGTACCCATCCGTGATA 2670 Score = 174 bits (192), Expect = 5e-39 Identities = 323/474 (68%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 21703 GCAGTTTTAATACAGCGCATAATGATTTTCCGTGAGATATTCTCAGCTTCAGCTAATTTA 21762 || || || |||||||| |||| || || ||||| ||||| || || ||||| | | Sbjct 1103 GCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCAGCCAGCGCA 1162 Query 21763 CTTACATTCCCATCAAAATCATTATGCAGACGGCGTGAATAACGTTGGCCGCGCTCAAAT 21822 | ||| ||| |||| ||||| |||| |||| || |||||| || || || ||| | Sbjct 1163 GAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCATAACGCTGACCACGTTCATAA 1222 Query 21823 GCTGATGTAGGTCGGTAATCGTTACCGATTTGCGACAGCCATGCCATTTGCTCTTCGTCT 21882 || ||| || || ||||||||||| | | || | ||||| ||||| || || Sbjct 1223 GCACTTGTTGGGCGATAATCGTTACCCAATCTGGATAATGCAGCCATCTGCTCATCATCC 1282 Query 21883 AAATCCCCGACAAGGACCCGATAATCTGTTTTTGTAATTATTGCAGTTTTGCGGCGGCGA 21942 | || || || || || |||||||| ||| |||| | |||| ||| || |||||| Sbjct 1283 AGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGCTTTACGACGGCGA 1342 Query 21943 CTGCCATCAGCTACTTCTATAACGCCGTTTACTTCGCGGCCATAGGCAGGGTTCTGCTGG 22002 || ||||| || | |||||| || || |||| || || | || || |||| || Sbjct 1343 CTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGCCGGTGTCTGTTGA 1402 Query 22003 CCAGATAATTTGAATGAAGGGATCAGGTCATCTAATGCGGTTTCAGTTAGCAACTCTTGG 22062 |||| | | || |||||||| || ||||| | |||| ||||| |||| ||| ||| Sbjct 1403 CCAGTCAGTAGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAGTAAGCAGCTCCTGG 1462 Query 22063 TCACGCTCATTCCCGCACCAAACCATTGTGGCCTTATTAACTCTTTCTGCTGGTATGGTT 22122 ||||| ||||| || |||| ||| | || ||| | ||| || || | | | | Sbjct 1463 TCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTATCACCCCGGAGCACT 1522 Query 22123 TTAAGAACAAAATGAACATCACGGCCACAGACAGAAAGGGTAATCTGATTACCG 22176 | |||| ||| | ||||| || ||||| |||| | ||||| ||||||| Sbjct 1523 TCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGGCATTACCG 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148162037011482