Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq11 91.5 1e-13 >seq6 Length=831307 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || ||||||| |||||||||||||| || |||||||| Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||| |||||||| || ||| |||| | | || ||||| || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| || ||| ||||| Sbjct 381489 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 381430 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 381429 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || || |||| || ||||||||||| |||||||| || Sbjct 381381 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 381322 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| |||||||| || ||| |||| | || |||||||| || Sbjct 381321 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 381262 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||| ||| || | ||| | |||| ||||| Sbjct 381261 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACA 381202 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| ||||| || ||||| || ||||| ||||| Sbjct 381201 TCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 >seq11 Length=1635978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || || |||||||| ||||| || || | ||| | |||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1474595 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| | || |||||||| ||| | |||||||| || Sbjct 1474596 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1474655 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | ||| ||||| || | || || ||||| Sbjct 1474656 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1474715 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT--TAAAC 20216 ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 1474716 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAAC 1474754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419583819831741