Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 248 7e-61 >seq10 Length=1513010 Score = 248 bits (274), Expect = 7e-61 Identities = 611/910 (67%), Gaps = 19/910 (2%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 1394813 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 1394756 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| ||| || || Sbjct 1394755 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1394696 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| ||| ||||| | ||| Sbjct 1394695 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAAT 1394636 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTATTAA 13038 |||| ||||||||||| || ||||| || ||| || || | |||||||| ||||| Sbjct 1394635 AATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1394577 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| | ||| | |||||| ||||||||||| ||||||| Sbjct 1394576 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1394517 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTTAAACATCATACATGCAA 13157 | | | || | ||| | |||| || | ||| || || | || || Sbjct 1394516 ATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCTATAA-ATTAAGCAATTAA 1394458 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||| ||| ||||||||||||||||| || | || || |||||||| ||| | | Sbjct 1394457 AATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTA 1394398 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 | ||||||||| ||||||||| ||| ||| || ||| |||||||||| Sbjct 1394397 ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTT 1394338 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 | || |||| |||| | |||||| || | | | | | | | |||||| | Sbjct 1394337 CGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCCATT 1394281 Query 13338 TTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | ||||| |||||| || |||| || | | |||||||| || || | ||||||| Sbjct 1394280 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATGAAATAAA 1394222 Query 13397 TAAtttttttC-CTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 | || | || ||| || || ||||||| |||| || ||||| ||||| |||| | Sbjct 1394221 T--TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAG 1394164 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || |||||||| | |||||||| ||| ||||||| | | || || || || | Sbjct 1394163 AGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTA 1394104 Query 13515 CTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 |||| ||||| || || ||||| ||||| ||||| || |||||||| |||||| Sbjct 1394103 CTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAA 1394045 Query 13574 aaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGA 13633 || || || | || || ||||| | ||||| ||| | || ||| | ||| Sbjct 1394044 AATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTTTTCAAAGTCTTTC 1393985 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693 ||||| |||||||||||| || ||| | |||||||| || || |||| || ||||| Sbjct 1393984 AAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAA 1393925 Query 13694 ATCATCCATA 13703 | |||||| Sbjct 1393924 AAATTCCATA 1393915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978928032722