Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq554 279 2e-70 >seq554 Length=5135 Score = 279 bits (308), Expect = 2e-70 Identities = 570/841 (68%), Gaps = 11/841 (1%) Strand=Plus/Plus Query 27608 CCTTT-CCTACTTCATCTGTCACCCTGACAACTTGACGCAGAACCATCGACCCCCACGTA 27666 ||||| || |||||||| || | | ||||| | |||||||| ||||| | | Sbjct 2105 CCTTTACCAACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCA 2164 Query 27667 TTTCTTATCTGCTCTTCCATCCAGCGCGACTGATTACCAGTAGTCAGGCTGTATTTGGTT 27726 | | || ||||| |||||||| | |||||| ||| || | |||||||||||| Sbjct 2165 TCCCGAATTTGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTA 2224 Query 27727 AGCAGCAGTCGTACCACCGGCTCGAAACCGCCTAAATCAACGGTTTTTAGTAGGTCCAGA 27786 |||| | ||||| | |||||||| || | ||||||| | || || || || || Sbjct 2225 AGCAAAATACGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGA 2284 Query 27787 AGCATGGTGAAGAACTGCAGAACGGATGAATAATCAAATAGCTCTGCAGGGGTAGCTACG 27846 ||||| ||| |||||||| |||| | || ||||| | ||| ||||| || | || Sbjct 2285 AGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACA 2344 Query 27847 ACAATAATATCGGCAGCACAAACAACATTAATCGTCCCTGTTCCGAGGTTAGGAGCGCTA 27906 | | | ||| |||||||| || ||||||||||| || | || |||||||| ||||| Sbjct 2345 ATCAGCACATCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTG 2404 Query 27907 TCAATAACGATAATGTCATAGTTATCCCATACGGATTCTATAGCAGCCCGTAGCATCAGG 27966 |||||||| || | ||||||| || || | ||| || || || ||||||||| Sbjct 2405 TCAATAACTATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGG 2464 Query 27967 TGAGG--CGGATGAGGTAGTTTTCCTTGGGCGTGGTATT---GCATCAGGTCCGTTTCGA 28021 || || ||| || || ||||| |||| | | ||| ||| | || ||||| | Sbjct 2465 TGTGGATCGG-TG-GGCAGTTTACCTT---CATCAAATTTGCCCATTAACTCAGTTTCAA 2519 Query 28022 TACGGTGAAGCGCCAAGCAGCTGGGGATAATGTCCAGACCTGGCCAGCAGGTCGGCTTTA 28081 ||||||| || |||| ||| || |||||||| || || |||||||| || ||||||| Sbjct 2520 TACGGTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTA 2579 Query 28082 TAGCGTATTCCGCATTATCACGCTCACCAAGGTAAAACGGGAGCAAAGTATCATCGGCGT 28141 | || || ||| || || ||||| || || || || | ||| || || || | Sbjct 2580 TTGCATAAGTGACATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCAT 2639 Query 28142 GAATGTGCAAATCAGGCACATAGCCATGATACATAGAGGCGGTTCCCTGCGGATCATTAC 28201 |||| || | ||| || || | || |||||||| ||||| |||||||| || || |||| Sbjct 2640 GAATATGAAGATCTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTAC 2699 Query 28202 CTTCAATGAGTAGAACTCGGTGACCCTGTAAGGCTAACCATTGAGCTTCATGTACTGCAG 28261 |||| | ||| | ||| || | |||| | || | ||||| ||| || | | Sbjct 2700 CTTCCACGAGCAAAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAA 2759 Query 28262 ATGAGGTTTTATAAACGCCACCTTTGTGTGACATAACAGCTAAAACGGCTGGATTTTTAT 28321 ||||||||| |||||||||||||| || | ||| | | || | |||| | | Sbjct 2760 CTGAGGTTTTGTAAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGT 2819 Query 28322 CGGCTGGCCGTTGATTAGGATTACCGAAAATGTTCCGCATATGGCTAATTTGGTCGATGG 28381 | | | ||| | | |||| || | | |||||||| ||||||| || || | Sbjct 2820 CTTCAGCACGTCGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTG 2879 Query 28382 TATAGCCAGCACGACGTTCGACGCGGCCACGCAATTCAAAATCAGGTGGCGGTAACCGCC 28441 |||| ||| |||| | || || || || || | ||| | ||| || |||||| |||| Sbjct 2880 TATAACCAACACGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCC 2939 Query 28442 C 28442 | Sbjct 2940 C 2940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165000304840566