Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 seq7 192 7e-44 seq3 89.7 6e-13 >seq4 Length=705592 Score = 217 bits (240), Expect = 2e-51 Identities = 414/604 (69%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 41779 AATTTTAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACGATATTT 41720 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 41719 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAA 41660 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| ||| ||||||||||| ||| || Sbjct 41659 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACCGGAAAAACATTAATAGCTAGA 41600 Query 164572 TGCATTGCTCAAGCTTTTAA--ATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | || | || || | | || ||| |||||| | ||||| |||||| ||| Sbjct 41599 CAAATAGGCAAAACATTAAATGCTAGAGAACCG--AAAATTATCAATGGGCCTGAAATAT 41542 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || || || |||||| | || |||| ||| || | || || ||| | ||||||||| Sbjct 41541 TAAATAAGTACGTAGGTCAATCTGAAGAAAATATTCGTAATTTATTTAAAGAGGCTGAAT 41482 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGATGAGAT 164747 || | ||| || | || || | | | ||||||| ||||| | || |||||||| Sbjct 41481 TGGAGTATAAGCAATCTGG-AGAG-AATTCATTATTACATATTATTATATTAGATGAGAT 41424 Query 164748 AGATGCTCTTT---GCAAAAAACGTGGTGAT-AATAT-----------TATTCATGATGC 164792 |||||| ||| | ||| | || ||| | || | | | ||||| Sbjct 41423 AGATGCAATTTGTCGACAAAGAGGTAGTGCTGCATCTAGTGGGTCAGGTGTAAATGATAG 41364 Query 164793 AGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 | |||||||| || | || ||||||||||| ||| | |||||||||||| || | Sbjct 41363 TATAGTTAATCAATTATTATCAAAAATAGATGGAGTAAATAGCTTAAATAATATACTATT 41304 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | |||||||| || || |||||||| ||||| || || ||| |||| || ||||| Sbjct 41303 AATTGGTATGACAAATAGAATAGATTTAATCGATGAAGCATTGTTAAGACCAGGCCGATT 41244 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 ||||| | || |||||| ||||||| | |||||||| || ||||||| ||||| | Sbjct 41243 TGAATTACATATTGAAATATCATTACCCAATAAAGAAGGTCGAATTCAAATATTAAATAT 41184 Query 164973 TCAT 164976 |||| Sbjct 41183 TCAT 41180 >seq7 Length=1057013 Score = 192 bits (212), Expect = 7e-44 Identities = 429/630 (68%), Gaps = 23/630 (4%) Strand=Plus/Minus Query 6798 TGATCGAGTTAATTGTTCTTTTATAGCTTTTAT-ATGATCTAAATAAATATGAGCATCTC 6856 || || | |||| || |||||| |||||| | ||||| ||||| |||||||| || Sbjct 916124 TGTTCTATTTAACTGAACTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTC 916066 Query 6857 CTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTA 6916 | | ||||||||||||| |||||| | || | |||| || || | |||||| | Sbjct 916065 CCAATACATGAATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAA 916006 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 ||| | ||| ||||| | ||| || || ||||| | || | ||| |||||||||| Sbjct 916005 ATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGAT 915946 Query 6977 AACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGA 7035 | ||| ||| ||||| | || | | ||||||||||||| || | |||||| || Sbjct 915945 A-CATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGG 915887 Query 7036 GGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTAT 7093 ||||| | ||||||| ||| | |||||| ||| ||| ||| || |||||| Sbjct 915886 GGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA- 915830 Query 7094 CATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCT 7152 ||| | | | |||||||||| || ||||| ||| || |||||| | ||| | | || Sbjct 915829 CATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCT 915770 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 | ||||| || ||| || | |||| | ||| ||||| || ||||||||||| || ||| Sbjct 915769 TTATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAA 915710 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT 7270 || |||||||| ||| |||| | ||| || | ||||| | || |||| | Sbjct 915709 ATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATT--ATCTAAAAACTCTC 915652 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATA---AATTTAAAGAATTTG 7327 ||| |||| ||| ||||| || |||| ||||| | ||| |||| ||||| Sbjct 915651 TTGTCCCATTAGCTTCCCATATTCTTACATTTTTTTCTAATAGTGTATTT---CCATTTG 915595 Query 7328 TAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTG 7387 | ||| | | |||||||| | ||||| | || || | ||| | | |||||| Sbjct 915594 TTTCTCCCCTTATAAACCATAACAACTCTTCAATGATACCTCTTACAAATAATTTTTTTG 915535 Query 7388 TAGTGAATAAAGGGA---ATGTACTTAAAT 7414 | || ||||| || | || |||||||| Sbjct 915534 TTGTTAATAATGGAAAATATTCACTTAAAT 915505 >seq3 Length=540481 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| || |||| || ||||||| |||| || ||||||||||| | Sbjct 418432 TAAAGTAAAAGTACGATCAGTTAGAATACCTCAAATTGGAGATAAGTTTGCAAGTAGGCA 418491 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| ||||| | ||| | ||||||||||| ||||| || Sbjct 418492 TGGACAAAAAGGTACAATCGGTATAACCTATAGAATGGAAGATATGCCATTTACATCTGA 418551 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| ||||||||||| |||| ||| ||||| Sbjct 418552 TGGTACATTTCCTGATATTATTATGAACCCACATGCAGTTCCGTCTCGTATGAC 418605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867076607600