Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 141 8e-29 seq11 102 7e-17 >seq6 Length=831307 Score = 141 bits (156), Expect = 8e-29 Identities = 185/254 (73%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || |||||||| |||| || || ||||| ||||| || Sbjct 381406 TAATGTTTTTACAAAGATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGA 381347 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA 94873 ||| ||||| | ||| || || |||||||| | ||| || | ||||||||| || Sbjct 381346 TTCTTTTTGAATGTTGTAGTCAG--ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCA 381289 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||||||||| ||||| ||||||||||||||||| || | ||||| || || || Sbjct 381288 AAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGGATTTTAGCTTTAACA 381229 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | || || | | || || |||| ||||| |||||||| || | |||||| Sbjct 381228 TTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTT 381169 Query 94994 ACAAAGATCTGCAT 95007 || || |||||||| Sbjct 381168 ACGAAAATCTGCAT 381155 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || || || || |||||||| ||||| | || ||||| Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAG-- 381552 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| | || || | |||||||| |||| ||||||| ||||||||| || | Sbjct 381551 ATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTG 381492 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||||||||| || | |||||| || || ||| | | ||| || | | || | Sbjct 381491 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 381432 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || |||||||| || | ||||| |||||||| ||||| Sbjct 381431 CATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| | | || |||||||| |||| || || ||||| || |||||||| | Sbjct 381173 TTTTTACGAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTT 381114 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | || ||||| |||||||| |||||| | |||||||| | || || Sbjct 381113 TTTGAATATTGTAATCAG--ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAAT 381056 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| || || ||||||||||| || | |||||| || || ||| | Sbjct 381055 TAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTC 380996 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | ||| || | | || || |||| || || |||||||| Sbjct 380995 AATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCC 380954 >seq11 Length=1635978 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || || || || || ||||| | |||||| || | | || | || | || || Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCA-TCTTC 1474594 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | |||||||| | || ||||||||||| ||||| || ||||| |||||||| || | Sbjct 1474595 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1474654 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||||| || || | | || |||| | || || |||| ||||| ||||| Sbjct 1474655 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1474714 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||| ||||| Sbjct 1474715 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287495993960