Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq14 86.0 1e-11 >seq14 Length=1995265 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 207566 TGATGGAGCAGAAGAAGTAGTCCAATGTGAAGAAGATCAATATATACTAGAAGCAGCCGA 207625 |||||||| |||| || | | |||||| ||||||| |||||||| |||| ||| || Sbjct 189973 TGATGGAG-AGAAAAA--AATTGAATGTGCAGAAGATGAATATATATTAGACGCATGTGA 189917 Query 207626 AGATGCTGGTCTAGATATGCCTTCTTCTTGTAGAGCAGGAGCTTGTTCTGCTTGTTTAGG 207685 | | | | || |||||| | ||||||| || ||||||| | ||| || Sbjct 189916 AAAGCAAAATGTCGAATTGCCTTATAGCTGTAGAGGTGGCAGTTGTTCTACATGTGCAGC 189857 Query 207686 AAAAGTATTAGAAGGATCAGTTAATAATGAAGAACAATCATTCTTAGATGATGATCAATT 207745 |||| || | ||||| |||| |||||||||||||| | ||||||||||| ||| | Sbjct 189856 AAAATTAATTGAAGGGGAAGTTGATAATGAAGAACAAAGCTATTTAGATGATGAGCAACT 189797 Query 207746 AGAAGAAGGATGGTCACTTCTTTGT-GTTGCTATGCCACAGTCAGACTGTGTTAT 207799 | || || || ||||| ||| |||||| ||| | || || ||||| || Sbjct 189796 AAAACAAAAATATATTCTTCTATGTACATGCTAT-CCAAAATCCGATTGTGTCAT 189743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807548527575160