Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10 208 8e-49 >seq10 Length=1513010 Score = 208 bits (230), Expect = 8e-49 Identities = 618/944 (65%), Gaps = 31/944 (3%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 1394821 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1394765 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 1394764 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1394705 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| |||||| | Sbjct 1394704 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAA 1394645 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 1394644 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATT 1394585 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1394584 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1394525 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGT--------TTAA 21467 || |||||| || | | | | || || | | | ||| | || Sbjct 1394524 TTAACTATATT--TTGAACAACCTCTTCT---GGTA---ATTTATTTTCCAGCAAGCTAT 1394473 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | || || || |||||| || || |||||||| ||||| || ||||||||| || Sbjct 1394472 AAATTAAGCAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAA 1394413 Query 21528 ATGTTAAACC-GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCC 21585 |||||||||| | ||| || | | ||||| ||||||||||||| | |||| | ||| Sbjct 1394412 ATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTG-CACAAAAACTTCC 1394355 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||| || || || || || ||| || || | || |||| | | ||| | Sbjct 1394354 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA---AGAGTT 1394298 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 |||| ||||||||| |||||||| ||| || | ||| || || | || Sbjct 1394297 CGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1394238 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 |||||| | || | || | | || | |||| | || Sbjct 1394237 AATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAA 1394178 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||| ||||||| ||||||||||| | ||||| ||||| | | ||||| | ||| Sbjct 1394177 ACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCAT-AAAACTTTTTGG 1394119 Query 21826 CTCTGAACA-TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 || | | ||| || || ||||| ||| || ||||| ||||||||||| Sbjct 1394118 CTTCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCAT 1394059 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 |||| || ||||||||||| | | || ||||||||||| ||| || | |||||| Sbjct 1394058 CACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATT 1393999 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| | ||| ||||| |||||||||||| |||||||| |||||||| || Sbjct 1393998 TTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCT 1393939 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||| |||||||| | | |||| | ||| ||| || || ||| Sbjct 1393938 CAGCTTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGA 1393895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896405169640