Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 383 2e-101 seq10 165 1e-35 >seq6 Length=831307 Score = 383 bits (424), Expect = 2e-101 Identities = 966/1458 (66%), Gaps = 29/1458 (2%) Strand=Plus/Minus Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 424436 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 424377 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62489 || || ||||||||||| | | | | |||||| | || | | | || ||||| | | Sbjct 424376 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTTT 424317 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 62546 |||| ||||||| |||| | ||| | |||| Sbjct 424316 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 424257 Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 62603 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 424256 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 424200 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 62662 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 424199 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 424141 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 424140 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 424083 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || ||||||||||| || ||||| || ||||||||||| | Sbjct 424082 AATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTA 424023 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 424022 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 423963 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCA 62894 || | | ||| ||||| |||| | |||| | |||| || || ||| Sbjct 423962 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 423903 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 423902 ATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 423843 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | ||||||||| || || ||||||||||||| ||| || || ||||| ||| Sbjct 423842 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCA 423783 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 423782 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 423723 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAAT 63134 | || | || | | | |||| | ||||| ||||||| |||||| ||| Sbjct 423722 AAATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAAT 423663 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || |||||| | || || |||||||||| || ||||| || Sbjct 423662 TTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAA 423603 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| | Sbjct 423602 GTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 423543 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| ||| | | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 423542 AATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 423483 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | |||||| |||||||| ||||| | |||| || | | || | ||| ||| Sbjct 423482 AAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 423423 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||||| ||||| || || | |||| ||||||| |||||||||| | ||| ||| Sbjct 423422 CCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 423363 Query 63435 GATATACCATTGGTACCGGAGAT---ATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 ||||||||||| || || ||| | | || || | | ||||| | | Sbjct 423362 GATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTGTACAGCC 423306 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | ||| Sbjct 423305 ACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATA 423246 Query 63552 CCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 423245 CCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTTGG 423187 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || || Sbjct 423186 TGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATG 423127 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | ||| || | ||| | ||| ||||||| | || | |||||| Sbjct 423126 ATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAA 423067 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || ||||| | ||||| || || || || || || ||||| || |||| || Sbjct 423066 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAA 423007 Query 63791 AGTTTTAAAACCAAAATA 63808 |||||||| |||||||| Sbjct 423006 TGTTTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 165 bits (182), Expect = 1e-35 Identities = 323/473 (68%), Gaps = 6/473 (1%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||||| ||||||||| | | || |||| ||| || |||||||| || ||| Sbjct 1394386 TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCA 1394327 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 33501 || | || ||| || || || | | |||| |||||| || ||||| Sbjct 1394326 TTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAAT 1394267 Query 33502 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33561 || || ||||||| || || |||| || |||| ||| | || | | || || Sbjct 1394266 GCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTC 1394207 Query 33562 CTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 33621 ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1394206 TCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACA 1394147 Query 33622 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681 || || ||||| | || || | | || || | || ||||||||| | ||||| | Sbjct 1394146 GCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAAT--T 1394089 Query 33682 TCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33739 | | || |||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1394088 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1394029 Query 33740 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 33798 ||||||||| ||||| | | ||| ||| ||| || || || | ||| | |||| | Sbjct 1394028 TTATAAAATGCTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1393970 Query 33799 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 |||| |||||| | ||||||||||| ||||| || |||||||| | ||||| Sbjct 1393969 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCA 1393917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942052898760