Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq6 125 7e-24 >seq11 Length=1635978 Score = 134 bits (148), Expect = 1e-26 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 26750 TACTTTTTA-GTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCA 26808 ||||||||| || | ||||||||| | ||||||||||||||||| |||||| | |||| Sbjct 1474764 TACTTTTTACGTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCA 1474705 Query 26809 CCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 26868 | | || | ||| || || || || || | || ||| ||| || || |||| Sbjct 1474704 CTCTTGATGTTGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAG 1474645 Query 26869 AAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 |||| || || || |||||||||||| | |||| || || |||||| | ||||||| | Sbjct 1474644 AAGGAATTCCCCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAA 1474585 Query 26929 GAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| | | | | |||||||||||||||||||| || || | ||| |||| Sbjct 1474584 GAA-CATTATCTGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 >seq6 Length=831307 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| ||||| |||||| | ||||| | || | ||| || | Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| || || || |||||||| || ||||| |||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | ||| |||||| | ||||||| ||||| | ||||| ||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | || | || | ||| | |||||||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||||||||| |||||| | || || | || | ||| || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| || | |||| | || |||||| | ||||| | ||| ||| | | | || || || Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAG-AACATTATCTGATTACAA 381561 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | ||| | || | ||| | |||||||| Sbjct 381562 TATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658445051920