Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 172 1e-37 seq7 170 5e-37 >seq6 Length=831307 Score = 172 bits (190), Expect = 1e-37 Identities = 601/929 (65%), Gaps = 12/929 (1%) Strand=Plus/Plus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || | || | || ||| ||| ||||| ||| | | Sbjct 422983 TATGATTATTTTGGATTTAAAACATTAGAAAGGTCTTACTTATTACGTATTAATAATAAA 423042 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || |||| || || ||| ||| Sbjct 423043 ATTATTGAACGTCCTCAACATTTATTAATGAGAGTATCTATAGGAATACATATAGATGAT 423102 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTG-CTCGTGTA-TTCACGCACGCCA 363559 |||| || | ||||||||| | || | || | || || || || || | Sbjct 423103 CTTGAAAAGGCTTTAGAAACATATCA--TTTAATGTCACAAAAATACTTTACTCATGCTA 423160 Query 363560 CGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAA 363619 | || ||| | | ||| | ||||| | | || || |||||||| |||||| | || Sbjct 423161 CTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGCTTTTTATTAT 423220 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 |||||| ||||| || || ||||| ||||| ||| | ||| | ||||| | ||| Sbjct 423221 CAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTGCATTGATTA 423280 Query 363680 CCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACA 363739 || | ||||| || || ||||| | | || || || | | || || ||||| Sbjct 423281 GTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGATATTAGAGGTCAAAATTCTTACA 423340 Query 363740 TTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 | | || || | || ||| || ||||| | ||||| ||| | | || ||| | || Sbjct 423341 TCAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGAT 423399 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || || || || || || ||||||||||| | ||||| | |||||| | ||| | Sbjct 423400 ACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATGTT 423459 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||| | ||||||||||| ||| | || | | ||||| || ||||| Sbjct 423460 GAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAA 423519 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 |||||| | || |||||| | || ||||| ||||||| |||| |||||||| | Sbjct 423520 GAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGA 423579 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || ||| | |||||| ||| | | | ||||| | ||||||||||| | || Sbjct 423580 GTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAATGAATGTCCAGGCTTAAGTGAA 423639 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA---AGGCT 364095 |||||||| || | || |||| ||| || ||| | || || |||| Sbjct 423640 ACTTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAA--GAAGAAAATTTAGGC- 423696 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||| ||| ||||| | |||||||||| || | | || || || || Sbjct 423697 AAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGAAACT 423756 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || ||| |||||||| || |||||| | || || || || ||||| | | | Sbjct 423757 GGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAACCAAAAAAATTTA 423816 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || |||||| | || || ||||| || ||||||||||| || | || || || Sbjct 423817 GGAACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACCTGATGAA 423876 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGC 364304 || || ||||| | ||||| || || Sbjct 423877 GTAGCTGTTTGTAATTTAGCGTCCATTGC 423905 >seq7 Length=1057013 Score = 170 bits (188), Expect = 5e-37 Identities = 462/694 (67%), Gaps = 16/694 (2%) Strand=Plus/Plus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 915396 GAATATCAATATTTAAATATTATATATGATATAATAATGCATGGA-AATAAACAAGATGA 915454 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 915455 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 915514 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||||||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 915515 AT--ATTTTCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 915571 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 | |||||||| | ||| ||||||| |||| ||| || ||||||||||| ||| Sbjct 915572 GTTATGGTTTATAAGGGGAGAAACAAATGGAAATACACTATTAGAAAAAAATGTAAGAAT 915631 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | ||||| || | || ||| ||||| | | || | | || | | || Sbjct 915632 ATGGGAAGCTAATGGGACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 915688 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| | || ||| ||||||||||||||||| | ||||||||||| || || | Sbjct 915689 AGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATAC 915748 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||||| | || || || | | || ||||||| || | ||| | || || Sbjct 915749 AGATATGCATG-CTGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATT 915807 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| ||| | || || | | | || |||||| | |||||||||| ||| | | Sbjct 915808 TAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 915867 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || |||||||| | || || |||||| || | || || |||||||| || || | Sbjct 915868 TAGATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 915927 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| ||||| |||| | |||||||||||||| || |||| Sbjct 915928 AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATA 915987 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 915988 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 916047 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| ||||| || | ||| |||| |||||||| Sbjct 916048 AATTTATTCATGTATTGGGAAATGCTCATGTTTA 916081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342561816902