Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq11 111 1e-19 >seq6 Length=831307 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||||||||| |||||| | ||||| | || || || ||| | Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGA-ACCATC 381441 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 381442 AGATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 381501 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || || | |||| | || || ||| | ||||| | || ||| | | | ||||| | Sbjct 381502 GCAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAG-AACATTATCTGATTACA 381560 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||||||||||||||| | |||||||| |||||||| |||||||| Sbjct 381561 ATATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| ||||| |||||| | || || | || || || | | Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| || || || |||||||| || ||||| |||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | |||| | ||| || ||| | ||||||| |||| | || || ||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | || ||||| |||||||| |||||||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 104 bits (114), Expect = 2e-17 Identities = 184/267 (69%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 133013 TATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACAC 133072 |||||| ||||||||||| || | || | || || ||||| || | ||| ||| Sbjct 423668 TATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCAC 423609 Query 133073 ATCAATGACCA----TTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCA 133128 || || | ||| || || |||| | || |||||||| || || |||| ||| Sbjct 423608 ATTAAAGTCCAGTTCTTATTTTCCT----TTACTCTTTTCATAAATAAATCAGGTACCCA 423553 Query 133129 CATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTC 133188 || ||| |||||||||| ||||| ||| ||||| || |||| | | || || Sbjct 423552 AATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATC 423493 Query 133189 CaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCT 133248 ||||| |||||| |||| |||||| || || | |||||| || |||| ||||| || Sbjct 423492 TAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCT 423433 Query 133249 TTTACCT---CCCTGATCCACATGTCT 133272 ||| ||| || ||||| |||| ||| Sbjct 423432 TTTTCCTCCACCTTGATCTACATATCT 423406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAA 24076 |||||| | ||||| | || || || ||| | || || || || | || ||| || Sbjct 380954 GGAAAAACAATTACTCTTGATGTTGAA-CCATCAGATACTATTGAAAACGTTAAAGCTAA 381012 Query 24077 GATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||| || |||||||| || || || |||||||| ||| | |||| || || || || Sbjct 381013 AATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAACA 381072 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | | || |||| |||| | ||||| || ||||||||||||||||| | || || Sbjct 381073 ATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACACTT 381132 Query 24197 AGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| |||||||| Sbjct 381133 AGTTTTAAGATTAAGAGGAGG 381153 >seq11 Length=1635978 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || || Sbjct 1474747 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 1474689 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| ||| || || |||||||| || || || || Sbjct 1474688 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 1474629 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| || || || ||| | ||||||| |||| | | | | || | Sbjct 1474628 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAA-CATTATCTGACT 1474570 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||| || || | ||||| || Sbjct 1474569 ATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932536462455