Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 147 2e-30 seq11 111 1e-19 >seq6 Length=831307 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || || ||||| ||| | || || | || || || | || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | | |||| |||| ||| || |||||||| || |||||||| || Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 381501 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || |||||||||||||| | | | || | |||||||| Sbjct 381502 GCAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAA 381561 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 381562 TATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||||| ||||| ||| | ||||| | || || || | || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 381215 GATACCATTGAA--AATGTTAAAGCTAAAATCCAA-GATAAAGAAGGTATTCCTCCTGAT 381271 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||||||||| |||||||||||||||| | | || | || ||| Sbjct 381272 CAACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTAC 381331 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || |||| ||||| |||| |||||||||| Sbjct 381332 AACATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 381381 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| |||| ||| || |||||||| || |||||||| ||||| | | ||||| || Sbjct 381006 AAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCT 381064 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || ||||||||||| |||| | || | ||||||||||||||||||||||| || Sbjct 381065 GGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACC 381124 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| |||| |||||||||| Sbjct 381125 TTACACTTAGTTTTAAGATTAAGAGGAGG 381153 >seq11 Length=1635978 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1474745 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1474686 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 1474685 TGATACAATTGAA--AATGTTAAAGCAAAAATCCAA-GATAAAGAAGGAATTCCCCCTGA 1474629 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || |||||||||||||||| | || | || || Sbjct 1474628 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTA 1474569 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||||||||| || || ||||||| || Sbjct 1474568 TAACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324509136715