Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 226 3e-54 >seq10 Length=1513010 Score = 226 bits (250), Expect = 3e-54 Identities = 580/866 (67%), Gaps = 23/866 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 1394768 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1394709 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 1394708 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAACAAC 1394650 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 1394649 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 1394591 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 1394590 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 1394533 Query 93024 CGGCTTCTTTCA--AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | | |||| | | || || | |||| ||| | | | | | | Sbjct 1394532 CTGCTTCTTTAACTATATTTTGAACAACCT-CT-TCTGGTAATTTATTTTCCAGCAAGCT 1394475 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || |||||||| ||| || || ||||| ||||| |||| ||||| ||||| || Sbjct 1394474 ATAAATTAAGCAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACT 1394415 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | |||| || | ||||||||||| | |||||| || Sbjct 1394414 AAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCC 1394355 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | ||| ||||| ||||| || |||| || ||||| | ||| |||||| | | Sbjct 1394354 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAGTT 1394298 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 || | |||||||| ||||| ||||| || || || |||| |||| Sbjct 1394297 CGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1394238 Query 93322 GATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| | |||| | |||||| ||| | | ||| | || || |||| ||||| Sbjct 1394237 AATAGCATGAAATAAATTTAATCT--CTCTTTCTCATCCCTAATATAATTATCAATTAAT 1394180 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | | ||| ||||||| || | ||| || | || ||||| || | || || | | Sbjct 1394179 AAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTG 1394120 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACC 93498 ||||| | || || |||||| ||||| | ||| | | |||||| ||||| || Sbjct 1394119 GCTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCC 1394061 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| ||||||||||| || | | ||| ||||||||||| || |||| | || | Sbjct 1394060 ATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAA 1394001 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || || | || | ||| |||| | ||| | |||||| |||||||||| || || Sbjct 1394000 TTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGC 1393941 Query 93619 TTCTGCTTTTTTGTACATATCCCATA 93644 || |||||||| || | || ||||| Sbjct 1393940 CTCAGCTTTTTTATAAAAATTCCATA 1393915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856198937640