Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq11 91.5 1e-13 >seq6 Length=831307 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| || |||||||||||||||||||| || Sbjct 381384 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 381325 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| || || | || | | ||||| || ||| Sbjct 381324 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 381265 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || || ||| | |||| | | ||||| ||| |||| | ||| Sbjct 381264 GGAATACCTTCTTTATCTTGGAT-TTTAGCTTTAACATTTTCAATGGTATCGGATGGTTC 381206 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 381205 AACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| || | || ||| ||||||||||||| ||||||||||||||||| |||||||| | Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || | | ||||| | |||||| ||||| | || | || || || || || | Sbjct 381550 TAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTG 381492 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCG 114332 | || |||||||| || ||| ||| | |||| | | ||||| || || | | ||| Sbjct 381491 GGATACCTTCTTTATCTTGAAT-TTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCA 381433 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||||||||||| || ||||| Sbjct 381432 ACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 82.4 bits (90), Expect = 6e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| ||||||||||||||||| |||||||| Sbjct 381156 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCA 381097 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || | |||||| |||||| | || | | ||||| || || Sbjct 381096 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 381037 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAA 114315 || || |||||||| || ||| ||| | |||| | | ||||| Sbjct 381036 GGGATACCTTCTTTATCTTGAAT-TTTAGCTTTAACGTTTTCAA 380994 >seq11 Length=1635978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||||| || || |||||||||||||| || || | | || || | |||||| Sbjct 1474536 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 1474594 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| |||||| | || | | ||||| || || ||||| |||||||| || Sbjct 1474595 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1474654 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||||| |||| | | ||||| || || | | ||| || || | || | |||| Sbjct 1474655 GAT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1474713 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| | ||||||||||| || ||||| Sbjct 1474714 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131015423532