Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 125 2e-23 seq11 122 2e-22 >seq6 Length=831307 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | || || | || ||||||||||||||||| || || Sbjct 381346 TTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAA 381287 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| |||||||| ||||| || || Sbjct 381286 AATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGGATTTTAGCTTTAACATT 381227 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | |||| | ||| || || || ||||| || || ||||| | ||| || || Sbjct 381226 TTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTAC 381167 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 381166 GAAAATCTGCAT 381155 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || || | | || | |||||||||||||||||||| || || Sbjct 381574 TTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAA 381515 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | || || ||| | |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 381514 AATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTT 381455 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || || || ||||| | || || || Sbjct 381454 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 381395 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 381394 AAAGATTTGCAT 381383 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || || | || || | ||| || |||||||||||||| ||||| Sbjct 381118 TTCTTTTTGAATATTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAA 381059 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 381058 AATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTT 380999 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| |||| ||| | ||| || || || || || || || || Sbjct 380998 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCC 380954 >seq11 Length=1635978 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || |||||||| | | || | ||| ||||||||||||||||| ||||| Sbjct 1474554 TCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAA 1474613 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| | || |||||||||||||| |||||||| ||||| || ||| Sbjct 1474614 ATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATTT 1474673 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || || ||||| || || ||||| | || || || Sbjct 1474674 TCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACA 1474733 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1474734 AAGATTTGCATT 1474745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644409433158