Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq11 95.1 1e-14 >seq6 Length=831307 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | ||||||||||||||||||||||| || | | || | Sbjct 381372 AATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTA 381313 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || |||||| |||| | | || || || |||||||| |||||| Sbjct 381312 CCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCT 381253 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 381252 TTATCTTGGA-TTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGT 381194 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||||||||||||||| ||||| Sbjct 381193 GATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| |||||||| | | || | Sbjct 381600 AATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTA 381541 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 ||||||| | || || || ||| |||| | || ||||| || || || || |||||| Sbjct 381540 CCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCT 381481 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| || || | ||||| | || || || | ||| Sbjct 381480 TTATCTTG-AATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGT 381422 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || |||||||| || |||||||| Sbjct 381421 AATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 >seq11 Length=1635978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||||||||| || || | | || | | ||||| | || || || Sbjct 1474548 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1474607 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | | || || || || |||||||||||||| ||||| | |||||||||| Sbjct 1474608 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGA-TTTTTGCTTT 1474666 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||||| | || || || | ||| | || || ||||| || || Sbjct 1474667 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1474726 Query 64426 TTTTACGAAAATTTGCATTTT 64446 |||||| || ||||||||||| Sbjct 1474727 TTTTACAAAGATTTGCATTTT 1474747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640671684840