Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016-
11-23] 661 sequences; 19,350,400 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 3e-15
>seq6
Length=831307
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460
|||||||| |||| | || || ||||||||||||||||| ||||| | | |
Sbjct 381366 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG--ATAGTGTTCTACCAT 381309
Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520
| || | |||||| |||| | | |||| | ||||| || ||||| ||||||||||| |
Sbjct 381308 CTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTAT 381249
Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580
| |||||| ||| | | ||| | ||| |||| | || || || | || | |
Sbjct 381248 CTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATTG 381189
Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || || | ||||||||| |||||||||||
Sbjct 381188 TTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155
Score = 82.4 bits (90), Expect = 8e-11
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443
||| || |||| || | ||||||||||||| | | || || |||||||| ||||| ||
Sbjct 381613 GCAACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATC 381554
Query 138444 -GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502
| | || || | ||| || | |||||| || | | | |||| || || || || |
Sbjct 381553 AGATAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAG 381495
Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGAC 138561
| || ||||||||||| || ||| |||| | ||||| | ||| | || || | |
Sbjct 381494 GTGGGATACCTTCTTTATC-TTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGT 381436
Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || | || | ||||| || || | ||||||||||| || |||||
Sbjct 381435 TCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258299631920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |