Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq11 116 3e-21 >seq6 Length=831307 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || ||||| ||||| ||||| ||||| | ||| || Sbjct 381597 CTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCG 381538 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || ||||||||||| || || || || ||||||||| Sbjct 381537 TCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTA 381478 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | || || || ||||||| Sbjct 381477 TCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATT 381418 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||||||||| |||||||| Sbjct 381417 GTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| ||||| || || || || | ||| || | Sbjct 381369 CTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCA 381310 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| ||| || || || ||||| ||||||||| Sbjct 381309 TCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTA 381250 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| ||| | ||| | ||| ||||| | || || || ||||| | Sbjct 381249 TCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGATT 381190 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||||||| ||||| ||||| Sbjct 381189 GTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| ||||| ||||| ||||| | ||| | | Sbjct 381141 CTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAGTGTTCTTCCA 381082 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| ||| | || |||| ||| || || || || || ||||||||| Sbjct 381081 TCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTA 381022 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | || || || ||||||| Sbjct 381021 TCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATT 380962 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 380961 GTTTTTCC 380954 >seq11 Length=1635978 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 ||||| || ||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 1474548 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1474607 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || |||| ||| || || || ||||| |||||||||||||| |||||| ||| Sbjct 1474608 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1474667 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | || || || | || || || ||||| | ||||| ||||||| ||| Sbjct 1474668 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1474727 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 1474728 TTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999465323560