Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 >seq6 Length=831307 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| || || ||||||||| ||||| ||||| | || | | || || Sbjct 381591 ACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCTTCT 381532 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| || |||||||| | || | |||||||| || Sbjct 381531 AATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCTTGA 381472 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | || |||| ||| || || | |||||||||||| Sbjct 381471 ATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTT 381412 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| ||||| ||||| Sbjct 381411 CCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || |||||||| ||| |||||||||| | || ||||| | || | ||||||| Sbjct 381311 CATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTT 381252 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 | || ||||| ||||| | | | || || | ||| || || | ||| | Sbjct 381251 TATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACATCAAGAGTGA 381192 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||| || ||||||||||||||||| |||||||| Sbjct 381191 TTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366801612213