Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 >seq6 Length=831307 Score = 138 bits (152), Expect = 1e-27 Identities = 699/1102 (63%), Gaps = 14/1102 (1%) Strand=Plus/Plus Query 111897 ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 111956 || ||||| || |||||| |||| ||||| | |||||||| | | || ||||| | Sbjct 423340 ATCAGAGGAACTAATGGTATATCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGAT 423399 Query 111957 ACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTT 112013 ||||| | |||||| | |||| ||| | | || || ||| | || || ||| || Sbjct 423400 ACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTGTATATGTT 423459 Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073 || |||||||| | ||||| | || || | || || | || || ||| | || Sbjct 423460 GAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAA 423519 Query 112074 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133 || | | || ||| | || | ||| | ||| | || ||| | || ||||| ||| Sbjct 423520 GAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGA 423579 Query 112134 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGAT 112193 || |||| | | || ||| || | | || || | | || || | || Sbjct 423580 GTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAATGAATGTCCAGGCTTAAGTGAA 423639 Query 112194 GCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACT 112253 | |||||| || |||||| | || ||||| ||||| ||||||| | | | Sbjct 423640 ACTTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGAAGAAAATTTAGGCAAA 423699 Query 112254 GCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGG 112312 || || | || ||| | ||| ||||| | ||| | |||| || ||||| Sbjct 423700 AAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAATAGAAACTGG 423758 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAAGAATTTGG 112371 | |||||||||| | || ||||| || ||||| | ||| | || ||||| ||||| | Sbjct 423759 TGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AACCAAAAAAATTTAG 423817 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | || || || || | ||| ||||| | |||| |||| ||||| Sbjct 423818 GAACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACCTGATGAAG 423877 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| ||||| | || || || || | ||| | ||| ||| ||| | ||| Sbjct 423878 TAGCTGTTTGTAATTTAGCGTCCATTGCATTATGCAAATTTGTTGATAGAGAAAAAAAAG 423937 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 |||| ||| | ||||| | | || |||| |||| | | || | ||| || | | | Sbjct 423938 AATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTTAGATAAAA 423997 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||||| ||||||| ||| || ||| | ||| | ||| |||| || || | | Sbjct 423998 TTATTGAAAGAAATTATTATCCAGTTAAAGAAGCTGAAAGATCAAATAAAAGGCATAGAC 424057 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | ||||| | || || ||||| | || ||| ||| || |||| | | ||| || Sbjct 424058 CTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATATCCATATG 424117 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || ||||| || ||| | ||| | |||||||| || |||||| | || ||| Sbjct 424118 AATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTATGCTGCTT 424177 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || | | || |||||| | || ||| ||||||||| | | | | ||| || Sbjct 424178 TAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATCAAGGTAGTC 424237 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTTCACTA- 112849 |||| ||||| | | ||||||||||||| |||| | | | | | | | || Sbjct 424238 CAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGATAATAAATAT 424296 Query 112850 --CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAACAGTCTTTT 112906 || ||||| | | || || | ||| | | | || | | || |||| | Sbjct 424297 TGGGATTGGGA-TTTATTAAAAAAAAAAATAAGTAAACATGGATTAAGAAATTCTCTTCT 424355 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | ||||| ||||||||||| || || ||||||| || || |||||||||| |||||| Sbjct 424356 TTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAATGAATCCTTTGA 424415 Query 112967 ACCCTACACGACGAACATCTAT 112988 ||| || || | ||||| ||| Sbjct 424416 ACCATATACAAGTAACATTTAT 424437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737271115920