Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 4e-15 >seq6 Length=831307 Score = 96.9 bits (106), Expect = 4e-15 Identities = 227/342 (66%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 || ||||| || | ||||| || ||||||||||| | ||| ||||| | || || || Sbjct 423494 TCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTT 423435 Query 110758 C---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 | | || | || | ||||| | |||||| |||| || || || | ||| ||| Sbjct 423434 CTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGA 423375 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874 | | |||| ||| |||||| || || || || || || | | | ||| || Sbjct 423374 ACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGACCTCTAATATCT 423315 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || | | || ||| ||||| || || |||||||| |||||| | | | ||| Sbjct 423314 TGTACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTT 423255 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 || | ||||| || || ||||| | || | | | || |||||| |||||||| || Sbjct 423254 TCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGG 423195 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || | || ||||||| ||| || | |||||| || |||||| Sbjct 423194 GGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGA 423153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971133585800