Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 >seq6 Length=831307 Score = 118 bits (130), Expect = 1e-21 Identities = 419/641 (65%), Gaps = 13/641 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | || || ||||||||| |||||||||| || || ||||||| || || Sbjct 424437 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGA 424378 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TTTCCTTGATGCGTT 106052 ||||||||||| ||||| | | |||| || | | || | ||| ||| | || Sbjct 424377 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTTT 424318 Query 106053 CCTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAAT 106108 || | || |||||| || || || | | ||| | |||| ||||||||||| Sbjct 424317 TTTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAAT 424260 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | |||||| | ||| ||| | | ||| ||||| | || ||| Sbjct 424259 TGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT 424200 Query 106169 GCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 ||||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 424199 GCCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 424141 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 424140 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 424081 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAA 106346 ||||| || || | ||||||||||| || | |||| || ||||| || | || Sbjct 424080 TCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTC-AGCTTCTTTAA 424022 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || | Sbjct 424021 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 423962 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCG 106465 ||| | ||||| | ||| ||| | ||| || ||| | |||| | | || Sbjct 423961 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACA-AATTTGCATAATGCA 423903 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || || ||||| |||||||| ||||| ||| || || | |||||| | Sbjct 423902 ATGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 423843 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 || || || || ||||| || || ||||| |||||||| Sbjct 423842 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTT 423802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975925283640