Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 seq3 116 5e-21 seq6 104 3e-17 seq10 89.7 7e-13 >seq7 Length=1057013 Score = 138 bits (152), Expect = 1e-27 Identities = 427/651 (66%), Gaps = 16/651 (2%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTT-TACGCC 104854 ||||| ||||||||||| ||| | ||||| | |||||||||||| || || || | Sbjct 915499 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTAAGAG 915555 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAAT 104914 ||| || |||| || |||||| | || | || ||||||| || || Sbjct 915556 G-TATCATTGAAGAGTTGTTATGGTTTATAAGGGGAGAAACAAATGGAAATACACTATTA 915614 Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGA 104974 |||| ||| | | ||||| | | |||||| || | ||||||||||| | | | Sbjct 915615 GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 915674 Query 104975 TTTCACTTTCGAAAAGAAGGTGAT---TTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 || |||| | ||||| | || ||||| |||||||| |||||||||||||| || Sbjct 915675 TTA---TTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCAC 915731 Query 105032 GCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATT 105090 ||| ||| |||||| || | || || | || |||| | ||||| | || ||| | Sbjct 915732 TTTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAACT 915790 Query 105091 AAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAG 105150 || | ||||| | || ||||| | || ||| || |||| ||| || | Sbjct 915791 AAAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGC 915850 Query 105151 TTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATT 105210 |||||||| | | ||| | ||||| | || || |||||| ||| ||||| Sbjct 915851 ATGGAATGTAAAAGATTTAGATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAATT 915910 Query 105211 TTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGG 105270 ||| || || || | ||| ||| |||||||||||||| |||||||| Sbjct 915911 TTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGG 915967 Query 105271 ATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATG 105330 | ||||| |||| ||||||| || |||||| | || | | | | || || Sbjct 915968 TCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 916027 Query 105331 GTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAA 105390 |||||| || || | ||||||||||| || ||| ||| |||||| ||| ||| Sbjct 916028 ATGTAATTTACAACCAGCTGAATTTATTCATGTATTGGGAAATGCTCATGTTTATAATAA 916087 Query 105391 CCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 |||||||| |||||| |||| ||||| |||| ||| || | ||||| Sbjct 916088 TCATGTTGAAAGCTTAAAAGTTCAGTTAAATAGAACACCCTATCCTTTCCC 916138 >seq3 Length=540481 Score = 116 bits (128), Expect = 5e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || ||| |||| | |||| |||||| |||||||| ||||||| ||||| | | || Sbjct 418768 TAATGGTAGAATGCTAAAATCTAAAATATTTATAGGACCAACATTTTATCAAAGATTAAA 418827 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| |||||||||| ||||| |||||| || | |||| | |||||| Sbjct 418828 ACATATGGTGGAAGATAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-A 418886 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| ||||||||||||||||||||| || Sbjct 418887 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAG 418946 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||||| | ||||||| | | || | ||||| ||| Sbjct 418947 ATTGTATGATATCTCATGGATCTGCTAAAATGTTAAAGGAA 418987 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 126170 TGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAATCAAGAAGATAGTGT 126229 ||| || ||||||||||||||||| |||||| || ||||||||||||||||||||| | Sbjct 417658 TGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAATCAAGAAGATAGTTT 417717 Query 126230 TATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTTGGTACCACAACTTATAATACTTT 126289 || | ||| || |||| || || | ||||||||| | | |||| ||||| Sbjct 417718 AATCATGAATCAATCATCCATTGATCGGGGTTTATTTAGAAGTGTTTTTTATCGTACTTA 417777 Query 126290 TAC-AGCGGAAGAAACAAAAAATGGTA 126315 ||| ||| ||||||| | || | |||| Sbjct 417778 TACTAGC-GAAGAAAAACAACAAGGTA 417803 >seq6 Length=831307 Score = 104 bits (114), Expect = 3e-17 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 |||||||| ||||||| ||| ||||| | |||||||||||| |||||||||| ||| Sbjct 177825 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 177766 Query 127005 GCTAGAAGTC-ATGGTCAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGTTCCC 127062 |||||| || | || | || | | |||| || ||||| ||||| ||||| || Sbjct 177765 GCTAGATCTCGAGGGCCTAGGCA-ATTATTAACACGACAACC-AACTGAAGGTCGATCAA 177708 Query 127063 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 177707 AAGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 177668 >seq10 Length=1513010 Score = 89.7 bits (98), Expect = 7e-13 Identities = 250/380 (66%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 98698 TAAAGTTGCCCAGTTGAGTGGTTACATTGCGGAACAAACTGATTATAAACACGGTGAACA 98757 |||||| || ||| | |||||| ||||| ||||| | || ||| | || |||||| Sbjct 454530 TAAAGTCGCTCAGCTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 454589 Query 98758 AAACCTTTGTGAAACAATAATAAAATTTGCACAAGATTTTGTGGGTACAAATAATATAAC 98817 | | |||| || ||||| | || ||| ||||| ||| |||| ||||||| Sbjct 454590 ATCATTACAACAAACTATTATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAA 454649 Query 98818 ACTACTTGAGCCAGATGGTCAGTTTGGTACCAGACTTGAAGGAGGTAAAGATTCGGCTGC 98877 | || || || ||| || ||||||| ||| ||||| ||||||||| | | || Sbjct 454650 TTTTCTAGAACCCTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCAGC 454709 Query 98878 ATCAAGGTATATTTATACCAAACCA-CATAAAATTTTAAAATATATATTTAGAGAAGAAG 98936 | | |||||||| | ||| |||| ||| | | || || |||||||| ||| | Sbjct 454710 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAAG-TATATTTAATGAATTTG 454768 Query 98937 ACGACCCTATCTTAAC---TTTTACTCCGGAAGGAGAA-----CCAACTAC----TTTTG 98984 |||| || || |||| ||| | | |||||| || | ||| || || | Sbjct 454769 ACGATCCAATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 454828 Query 98985 TTCCAGTAGTTCCTCTTATTTTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 99044 | ||||| ||||| ||| || | ||||| | || ||||||||||||| || | Sbjct 454829 TACCAGTTATTCCTACAATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 454888 Query 99045 GTTTTATTCCTCAATATAAT 99064 |||||||| | |||||| Sbjct 454889 CATTTATTCCAAACTATAAT 454908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658397759943560