Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 544 9e-150 seq10 318 7e-82 >seq6 Length=831307 Score = 544 bits (602), Expect = 9e-150 Identities = 1147/1704 (67%), Gaps = 48/1704 (3%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| ||||| || ||| | |||||| |||||||| | |||| ||||| || || Sbjct 424674 CTGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTC 424615 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | | ||| | ||| || | | || ||| ||||| | Sbjct 424614 CCAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACA-- 424557 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 424556 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 424498 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||| | ||||| ||| || || | | | Sbjct 424497 AAGATCTTTTAACAAATGAGGATTAACGACAAAGAATTCACCACTTAAAACACGTCTGTA 424438 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | |||||| Sbjct 424437 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGA 424378 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNN 47475 ||||| ||||| | ||| | || ||| | ||||||| ||||| ||| ||| | Sbjct 424377 AGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTT 424319 Query 47476 NNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCATATT 47532 | |||||||||| | | | || | ||||||| | |||| ||| Sbjct 424318 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATT 424259 Query 47533 GAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAG 47592 | | ||||||| ||| ||| ||| | ||||| || ||| || || || || | Sbjct 424258 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 424199 Query 47593 CGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | | |||| || || | ||| || ||| |||||| || |||||||||||| || | || Sbjct 424198 CCAATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 424141 Query 47651 TAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 || |||| || |||||| |||||| | ||||| ||||||||||| | Sbjct 424140 TA-ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 424082 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 ||||||| || || || ||||| |||||||| ||||||| || ||||||||| | Sbjct 424081 ATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGCTTCTTTAA 424022 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 |||||| | ||| | || |||||||||| || | ||| | Sbjct 424021 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 423962 Query 47830 CTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTGCTA 47883 | |||||| ||||||| ||| ||| || || ||| |||||| | | ||| | Sbjct 423961 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 423902 Query 47884 TAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCAC 47943 | || |||| |||||| |||||||| |||| || ||||||| || |||||| || Sbjct 423901 TGGACGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 423842 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 ||| ||||| |||||| || || || ||||||| || || ||| | ||||||| Sbjct 423841 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAAT--TACATGC 423784 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | |||| | ||| ||||||||||| || || | |||| || Sbjct 423783 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAG-----CA 423729 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTT------ATTATCATGTTCGTATTTAGT 48115 ||| | | | | | || | || | ||| ||| || | ||||||||| || Sbjct 423728 AACCATAA-ATCTTGTGCAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGT 423670 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||| || |||||||| || || | | | ||| || |||||||||||||| || Sbjct 423669 ATATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCA 423610 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| || | ||| | || || | |||||||| ||||||||| ||| |||| ||||| Sbjct 423609 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAAT 423550 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||||||| | || ||| | |||||| || ||| ||| || | | || | Sbjct 423549 AGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAA 423490 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | ||||| | |||||||||||| | ||||| || | |||| || ||| Sbjct 423489 AAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTT 423430 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || |||||||||| |||||| || |||| ||| |||||||||||||||| || | Sbjct 423429 TCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAA 423370 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAAT---ATAACTTCCACTAGCTCTTATATTACT 48472 |||||||||||||||||| ||||| || | || || || |||| |||| Sbjct 423369 ACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAC---CTCTAATATCTTG 423313 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | | | ||||||||| ||||| ||||| || | ||||| | || | || || Sbjct 423312 TACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTC 423253 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 | | || |||||||| |||| | |||| ||||| ||| || ||||||||| || Sbjct 423252 AAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGG 423193 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 ||||| |||||||||||||| |||| |||||| |||| |||| | ||| | Sbjct 423192 TCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACAT 423133 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 || | ||||||||| | | | || | ||| | |||||| ||||||||||| | Sbjct 423132 TAAATGATATGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCT 423073 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 |||||| | || |||||| | ||||| |||||| ||||| || || | || || | Sbjct 423072 CATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCT 423013 Query 48773 TTCCAATGTTTTAAAACCAAAATA 48796 ||| ||||||||||| |||||||| Sbjct 423012 TTCTAATGTTTTAAATCCAAAATA 422989 >seq10 Length=1513010 Score = 318 bits (352), Expect = 7e-82 Identities = 617/895 (69%), Gaps = 27/895 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 1394756 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1394697 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | ||||| |||||| Sbjct 1394696 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA 1394637 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| ||| ||| ||| | |||||||||| || Sbjct 1394636 TAATCG---ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 1394580 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| | Sbjct 1394579 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1394520 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTAT-----AGAAGATGTTTAAACATCAAA 18960 ||| | ||| ||||| | | | ||| || | | | |||| | || Sbjct 1394519 TATATTTTGAACAACCTCTTC--TGGTAATTTATTTTCCAGCA-AGCTATAAA--TTAAG 1394465 Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || |||||| |||| ||| || |||||||| |||||||||||| |||||||||| Sbjct 1394464 CAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAA 1394405 Query 19021 CCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGA 19078 ||| | | | | | || ||||| ||||| ||||| | | ||| |||| ||| | Sbjct 1394404 CCATGTA--ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATA 1394347 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| ||||| || |||| ||| || | |||||| || || || || | || || Sbjct 1394346 ATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT-ATCAT 1394290 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||||| |||||| || || ||||||| ||| || | || |||| || Sbjct 1394289 TTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCAT 1394230 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 ||||| || | | ||| | ||| ||| ||| ||| || |||||||| || Sbjct 1394229 GAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGG 1394170 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| || || |||||||| | ||| || ||||| | ||||| | | ||||| ||| Sbjct 1394169 TTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTA 1394110 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTATTCCATCACTAGCT 19377 | |||||||| || ||||| || | | | |||||||| |||||||||||||||||| Sbjct 1394109 TTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCT 1394051 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 ||||||||||||| |||||||| |||||||| ||||||| | ||||| | ||| || Sbjct 1394050 GCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTAATTT-TTCAAA 1393992 Query 19438 -TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || || | ||| | |||||||||| ||||||| | |||||||| || ||||| ||||| Sbjct 1393991 GTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTT 1393932 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||| | ||||||| ||| |||| |||||| || ||||||| || Sbjct 1393931 TTTATAAAAATTCCATACTTCAGGATACATAATAGGATGTAATGTAAATCTACTT 1393877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104155576040