Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 280 2e-70 >seq10 Length=1513010 Score = 280 bits (310), Expect = 2e-70 Identities = 567/833 (68%), Gaps = 19/833 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| ||| |||||| |||| || |||||||| ||||||| Sbjct 1394768 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1394709 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||||| ||||| || ||||||||| || || | | | | || || Sbjct 1394708 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACC 1394649 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| ||||||||||| ||||||| | |||| ||| | Sbjct 1394648 TAAACATTC--TAATAATCG-ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGA 1394592 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || || |||| | |||||| | || Sbjct 1394591 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 1394532 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||||||||| || ||| ||||| | | || || | | || | Sbjct 1394531 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCTATA 1394472 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | ||| || |||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 1394471 AATTAAGCAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 1394412 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 ||||| || | | | | | |||||||| |||||||||||| |||| |||| Sbjct 1394411 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 1394352 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || || ||||| || |||| ||||||| | | | | |||| | | Sbjct 1394351 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AGTTCGT 1394295 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 |||| |||||||| || ||| ||| || ||| | | || ||||||| Sbjct 1394294 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1394235 Query 37409 TGCTTTTAAGAGAAAGtttttttCT-TCACT-ATCTGTTATATAAGTATCAATTAGTAAA 37466 || | || | || || | ||| | || ||| | |||||| ||||||||| |||| Sbjct 1394234 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 1394177 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||| |||||||||| |||||||||| |||||| |||||| ||||||| | ||| Sbjct 1394176 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 1394117 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 ||| || ||| || || | ||||| | ||||||| ||||| ||||| |||||| Sbjct 1394116 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1394057 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAAT 37643 ||||||||||| || || || |||| |||||||||||| |||||| |||| |||| Sbjct 1394056 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATT---TAAT 1394000 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 1393999 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1393947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311905982440