Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6 194 1e-44 seq11 158 1e-33 >seq6 Length=831307 Score = 194 bits (214), Expect = 1e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | |||||||||||| | ||||||||||||||| ||||||||||| | Sbjct 381609 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381550 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || ||||| || || ||||| || || || || ||||| || || Sbjct 381549 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGG 381490 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| ||| || |||| | ||| || || | ||| || Sbjct 381489 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 381430 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 381429 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 185 bits (204), Expect = 7e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||||||||| || | || ||||||||||| || ||||| || | Sbjct 381381 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 381322 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| || || ||||| || || | |||||||| || ||| Sbjct 381321 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 381262 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| ||||| ||| ||| |||| | || || || | ||| || Sbjct 381261 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCAACA 381202 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| ||||| ||||||||||||||||| || |||||||| Sbjct 381201 TCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 Score = 154 bits (170), Expect = 1e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | ||||||||| || | ||||||||||||||| ||||||||||| | Sbjct 381153 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCAGAT 381094 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || ||||| || || || || || || | |||||||| || || Sbjct 381093 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 381034 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| ||| || |||| | ||| || || | ||| || Sbjct 381033 ATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 380974 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 |||||||| | ||||| || Sbjct 380973 TCAAGAGTAATTGTTTTTCC 380954 >seq11 Length=1635978 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 101250 TTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTC 101309 ||||| || || ||||| | ||| || |||||||| || || || || | | |||| Sbjct 1474525 TTAAATATATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTC 1474584 Query 101310 TGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTT 101369 | |||| || ||||| || || || || || || | |||||||| || ||||| |||| Sbjct 1474585 TTCCATCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTT 1474644 Query 101370 CTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAG 101429 |||||||||| |||||| ||| ||| |||| | || ||||| | ||| || ||||||| Sbjct 1474645 CTTTATCTTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAG 1474704 Query 101430 TGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| |||||||| ||||||||||| || ||||| Sbjct 1474705 TGATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 1474744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275207605977