Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 >seq6 Length=831307 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||||| || ||||||||||||||||||||||||| ||| | |||| Sbjct 381594 AAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGATAATGTTCTACCGTCT 381535 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || || || ||||| || | ||| || ||||| | || | || || || || Sbjct 381534 TCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGGGATACCTTCTTTATCT 381475 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| || ||| || | | || ||||| | || || || | ||||| ||| Sbjct 381474 TGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTT 381415 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||||||||| || ||||| Sbjct 381414 TTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| |||||||| ||| | | || || || || || |||||||| Sbjct 381345 TCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAA 381286 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || || || || || || ||| ||| Sbjct 381285 ATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGGATTTTAGCTTTAACATTT 381226 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || || || | || || |||||||| || ||||||||||| Sbjct 381225 TCAATGGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACG 381166 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 381165 AAAATCTGCAT 381155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934531190503