Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 >seq7 Length=1057013 Score = 122 bits (134), Expect = 2e-22 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 133933 TATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTG 133992 |||| || |||||||||||| || ||||| ||||| | || || || |||||| Sbjct 915839 TATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCCCCTTGTCATAT 915898 Query 133993 CTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTG 134052 || ||||||| | || ||| || || |||||||||||| | |||||| | || Sbjct 915899 TTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAAAGATCTTG 915958 Query 134053 TGATCTA-TTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGT 134111 |||| || |||| || || |||||||| |||||||| ||||| || | || ||||| Sbjct 915959 TGATTTAGGTCTT-GGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGA 916017 Query 134112 TAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCA 134169 |||||||||| ||| ||| || | ||| ||| | ||| || | ||| ||| ||| Sbjct 916018 TAGCACAAGTATGTAATTTACAACCAGCTGAATTTATTCATGTATTG--GGAAATGCTCA 916075 Query 134170 CATTTATAAAAATCACGTAGAA 134191 ||||||| ||||| || ||| Sbjct 916076 TGTTTATAATAATCATGTTGAA 916097 Score = 107 bits (118), Expect = 4e-18 Identities = 265/388 (68%), Gaps = 17/388 (4%) Strand=Plus/Plus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||| | || || |||||||||||||||||| ||| ||||| ||||| || | || Sbjct 769544 TTATTAGGGGATCCAGGTGTTGGTAAAACAGCAATAGTTGAAGGATTGGCTATAAAAATT 769603 Query 150458 GCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGG 150515 | | || ||||| || ||||| || ||| | | |||| | ||||||| ||||| Sbjct 769604 GTACAAGGAGATGTACCTGATTC-ATTAAA-AGGAAGAAAGTTAGTTTCTTTAGATATGT 769661 Query 150516 GTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTT 150573 | |||| | ||||||| |||| ||| | ||||| || ||||||||| || | | |||| Sbjct 769662 CTTCATTAATTGCTGGTGCTAAATATAGAGGTGATTTTGAAGAACGTTTAAAATCTATTT 769721 Query 150574 GCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATAC 150630 || ||||| | | || || | | || || |||| || ||||| || ||||| Sbjct 769722 --TAAAAGAAATCCAGGATTCAGAGGGACAAGTAGTTATGTTTATTGATGAGATACATAC 769779 Query 150631 TATTATGGGTGCTGGTGCGACTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAAC 150689 || | ||||||||||| | | || | ||| | || ||| | ||||| ||||||| Sbjct 769780 GGTTGTTGGTGCTGGTGC-AGTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAAC 769838 Query 150690 CTGCT-CTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCG 150747 | ||| ||| | | || ||| | | ||| ||||||||||| || ||||||| | Sbjct 769839 C-GCTACTAGCCAGAGGAGAATTAAGATGT-ATCGGTGCAACTACTGTTAGTGAATATAG 769896 Query 150748 TAAACACATTGAAAAAGATGCAGCACTA 150775 | || ||||||||| |||| || Sbjct 769897 ACAGTTTATAGAAAAAGATAAAGCATTA 769924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147580680985178