Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq553 589 7e-164 >seq553 Length=1089 Score = 589 bits (652), Expect = 7e-164 Identities = 328/329 (99%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 46896 GACATGAGGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACG 46955 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1083 GACATGAGGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGCTTTTACG 1024 Query 46956 TTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGT 47015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 TTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGT 964 Query 47016 TTGATGGCCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCC 47075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 TTGATGGCCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCC 904 Query 47076 TTTCCGGTGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAA 47135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 TTTCCGGTGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAA 844 Query 47136 ATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAA 47195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 ATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAA 784 Query 47196 TACCCTCTGAAAAGAAAGGAAACGACAGG 47224 ||||||||||||||||||||||||||||| Sbjct 783 TACCCTCTGAAAAGAAAGGAAACGACAGG 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151198813174500