Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq553 161 3e-35 >seq553 Length=1089 Score = 161 bits (178), Expect = 3e-35 Identities = 144/179 (80%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 45120 GATGTGTAAGTGATAATTATTATCG-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTAC 45178 ||| |||| ||||||| |||||| ||| |||||||||||||| |||||| | ||||| Sbjct 940 GATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTAC 881 Query 45179 GGGGCGGCGTCCGCGCAGATTCTCGCTATTTATGAAAATTTTCTGGTTTATGCCATTTCC 45238 ||||||||| || ||| | || ||||||||||||||||||||| |||||| | | ||||| Sbjct 880 GGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCC 821 Query 45239 GTTCTTCTTCTTGTTTACTCATTGTTTTTGTTAAAAACGTCCTCTCTCCAGAAAGGAAA 45297 |||||||||| | | ||| | ||||||| || |||| ||||| |||||||||| Sbjct 820 GTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAA 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145048461451296