Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq11 105 6e-18 >seq6 Length=831307 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || |||||||| ||||| || ||||| || || || ||||| || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || ||||| || | || |||||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || |||||||| |||||| || ||| | | || || ||| Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||| | ||| | || ||||||||| ||||||| || Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 381384 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||||||||| || ||||| ||||| || ||||| ||| Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || |||| || || ||||| || | || ||||| Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 381501 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || ||||| || |||||||| ||||| || ||| | | ||||| || Sbjct 381502 GCAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAA 381561 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||||||||| | || | || ||||||||| ||||||| Sbjct 381562 TATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 381609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||| ||| | || || || || |||||||| || ||| | ||| | | ||| Sbjct 381041 GATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGAT 381100 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||||||||||||||| | ||| | || ||||||||| ||||||| || Sbjct 381101 TACAATATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGTAT 381156 >seq11 Length=1635978 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 1474747 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1474688 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || ||||||| || ||||| ||| | ||| ||| Sbjct 1474687 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 1474628 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | || || || || |||||||| |||||| | ||| | | || ||| Sbjct 1474627 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTAT 1474568 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||||||||| || || | || ||||| || Sbjct 1474567 AACATTCAAAAAGAGTCAACCTTACATTTGGTAATA 1474532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425401372965519