Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 419 1e-112 >seq6 Length=831307 Score = 419 bits (464), Expect = 1e-112 Identities = 1064/1585 (67%), Gaps = 84/1585 (5%) Strand=Plus/Minus Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TA 25040 ||||||| | | ||| || ||| | || || ||||| ||| ||||| | ||| || Sbjct 424497 AAGATCTTTTAACAAATGAGGATTAACGACAAAGAATTCACCACTTAAAACACGTCTGTA 424438 Query 25041 TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | | | ||| || |||||||||| |||||||||||||||| ||||| ||||| | Sbjct 424437 ATAA-ATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTG 424379 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTT 25160 | ||||||||||| ||||| | || |||||||| || |||| |||| || | || Sbjct 424378 AAGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGTTTACTTATTTTTT 424319 Query 25161 GTTTTAATTTATCCCAATCTAAAT---TATTATCTAACTCGATATCGTTATCATATAAAT 25217 ||||||| ||||||||| ||| ||||||||| | | | || || ||| | Sbjct 424318 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTT---TTGCATTC-CACATA--T 424265 Query 25218 CAAATTGTAACAATCCA---CTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 |||||||||| | ||| ||||||| | ||||| | | | |||| || Sbjct 424264 CAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGAT---ATGATTCATATGGTCCAC 424208 Query 25275 TTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCG 25334 || | ||||| || || ||||| ||||||||||||||| ||||||| || Sbjct 424207 TTACTTGTGCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTC 424148 Query 25335 CTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGT 25392 | | ||||| ||||||| ||| || | | | | | | || || || || Sbjct 424147 TTCTATTTAATTCTTTAGCTTCTTCAGATTCATATGGATAT--CTTAAAAGCATAAATGT 424090 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 |||||||||||| || ||||||| ||||| || | ||| | ||||| | | |||| Sbjct 424089 ATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAGC 424030 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| |||||| ||||| | || || | ||||||| ||| | | || || Sbjct 424029 TTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAA--TT 423972 Query 25513 TGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTAC 25572 | ||| | || | ||| | ||| ||| || ||| | ||||| | || Sbjct 423971 TTAGTAATATCATAT---AATTTTTTAAAATTAAAT----TCTTTTTTTTCTCTATCAAC 423919 Query 25573 AAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAAT 25631 |||||| |||| || || || |||||||||||||||||| ||| | | || | | || Sbjct 423918 AAATTTGCATAATGCAATGGACGCTAAATTACAAACAGCTACTTCAT-CAGGTGATGTAT 423860 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT-- 25689 ||||| | || || |||||| || ||| |||| ||| ||| |||| ||||| || Sbjct 423859 ATTCAATAATTTCACAACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGGTTCG 423800 Query 25690 ATTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAG 25748 ||| | ||| ||| |||||||||| | |||||| || ||||| ||||| Sbjct 423799 ATTTA--GAATT-ACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGC 423743 Query 25749 ATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATCAG 25808 | ||| || ||| | ||| || ||| | ||| || || Sbjct 423742 TTTGTAATATAGCAAACCATAAATCTTGTGCAAGAACTGTTTTT------TTGCCTA--- 423692 Query 25809 AAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGC 25868 || || |||||| | | |||| || | | | ||| | |||||| Sbjct 423691 AATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT-TCTTCACCCC---AAGTTTCA 423636 Query 25869 CATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTT 25928 | || | || | | || | || || | |||| ||| | ||||| || ||| Sbjct 423635 CTTAAGCCTGGACATTCAT--TAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTACTC 423578 Query 25929 TCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTT 25988 | | |||||||||||| || | ||| || |||||||||||||| | ||||||| ||||| Sbjct 423577 TTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTT 423518 Query 25989 CTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTA 26048 |||| || ||||| ||| ||| |||||| || |||||||||||||| ||||||||||| | Sbjct 423517 CTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAA 423458 Query 26049 AATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTT 26108 ||| | ||||||| |||||||||||||||||||||||||||||| |||||||| || | Sbjct 423457 CATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTAT 423398 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG-TGCTATGAATC 26167 |||| |||||| | |||||||||||||| ||| |||| | || || | | || ||| Sbjct 423397 CATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCATTAGTTCCTCTGATGT 423338 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || || | ||||||||| || || | ||| || || || || ||| | Sbjct 423337 AAGAATTTTGAC-CTCTAATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTTACTA 423279 Query 26228 ATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCC 26286 || |||||| | || || ||| || || || |||| ||| |||| ||||||| Sbjct 423278 ATCAATGCACATTGCTTTAA-TGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGA 423220 Query 26287 TAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGT 26346 ||||||||| || ||||| | ||| | | |||||| |||||||||||||| || || Sbjct 423219 TAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGT 423160 Query 26347 AGCATGAGTATAATATCCTT----CACTCAAAGCTGTAT-----AAG---TTTCAAGAAC 26394 |||||||||| | ||| || || | || | | | | ||| |||||||| Sbjct 423159 AGCATGAGTAAAGTATTTTTGTGACATTAAATGATATGTTTCTAAAGCCTTTTCAAGA-- 423102 Query 26395 TTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCG 26454 ||||| ||| ||| ||| || |||| | ||| | | | || |||||| || Sbjct 423101 -TCATCTATA-TGT-ATTCCT-------ATAGATACTCTCATTAATAAATGTTGAGGACG 423052 Query 26455 TTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCC 26514 |||||| | ||||| | || |||| || ||||| ||||||| ||||| ||||| Sbjct 423051 TTCAATAATTTTATTAT--TAATACGTAAT-AAGTAAGACCTTTCTAATGTTTTAAATCC 422995 Query 26515 AAAATAATCATGATTGAAATCTCTT 26539 ||||||||||| ||| ||||||||| Sbjct 422994 AAAATAATCATAATTAAAATCTCTT 422970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037961525575