Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq14 159 5e-34 >seq14 Length=1995265 Score = 159 bits (176), Expect = 5e-34 Identities = 484/733 (66%), Gaps = 20/733 (3%) Strand=Plus/Plus Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856 ||||||||||||| ||| | |||||| | |||||| | || || | ||||||||| Sbjct 438411 ATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATATACATAATCT 438470 Query 47857 CTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGCT 47914 | ||||| ||||| || | || || ||||| |||||||| ||||| ||| || ||| Sbjct 438471 TTTGCATGACCCCAATCTCTAAATGTATCAATATTTCCTA-ATATAATAACGGT-TTGAA 438528 Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || | | ||| | || | ||||||| || || ||||| |||||||||| Sbjct 438529 TTTTTTTAAATATTTTTGCTATACCCTTTGTAATTTTTTTTGTAACAAATGTTTCACCAC 438588 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTCA 48033 |||||||| |||||||||||| | |||||| |||| | |||| |||||||| Sbjct 438589 GTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGATTCT 438647 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| | | | ||| | |||||| | |||||||| || |||| Sbjct 438648 CTATAATTTTTTGTTATATAATGGCTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 438707 Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149 | || ||||| | || | || | || || | |||||||| | ||| Sbjct 438708 TTAAACGGTGTATTTTCATTTTG-ACATTCGGTTTGAATAGTATTACCATATAATTCGGA 438766 Query 48150 GGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 || || || | || | || || ||| || |||| || | ||| || | Sbjct 438767 TGTTGAAGCATTATAAAATTTGA----TATTATCAATCTTTGATAATTTAATTGCTTCTA 438822 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTG-TCTGACCAGTATACTCGGGCATCTCAAACGAA 48267 | ||| | || || || || | || || | ||||| || || | ||||| Sbjct 438823 ATATTCTTAATGTACCAATAGC-TGTGCATTGTGCTGTATATTCAGGTAATTCAAAGCTT 438881 Query 48268 ACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATA 48327 || ||||||||||| ||||| | | |||||| || |||| ||||| | | || Sbjct 438882 ACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATATT 438941 Query 48328 ACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATAA 48387 | | || ||| || || ||| || |||||||| || ||||||| ||| | Sbjct 438942 AAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAAAT 439001 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 || ||||| ||||| | |||||||| | | | || | | | |||||||| ||| Sbjct 439002 ATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTTCA 439061 Query 48448 TACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||| | ||| ||||| ||| || ||||| ||||| |||||||| |||||| Sbjct 439062 TATCCTTTTTCTAAAAGTAGTTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCAAA 439120 Query 48507 GATTAAAGCAACT 48519 |||| |||||| Sbjct 439121 TATTAGTGCAACT 439133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665488901352520