Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 132 6e-26 >seq6 Length=831307 Score = 132 bits (146), Expect = 6e-26 Identities = 450/690 (65%), Gaps = 11/690 (2%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| ||||| || |||||||| Sbjct 423751 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAACCAAAAA 423810 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || | ||| | || |||||| | || || ||| Sbjct 423811 AATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACCT 423870 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGA 76083 ||||| |||||||| ||||| || || || || | | |||| | ||| || ||| Sbjct 423871 GATGAAGTAGCTGTTTGTAATTTAGCGTCCATTGCATTATGCAAATT-TGTTGATAGAGA 423929 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| | Sbjct 423930 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 423989 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGC 76202 | | | | ||||| ||||||| |||||| ||| | || ||||| || |||| Sbjct 423990 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCT-GAAAGATCAAATAAAA 424048 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 | || ||||||||||| | || || ||||| | || ||| |||||| | | | | Sbjct 424049 GGCATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGAT 424108 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 | ||| ||| || || ||||| || || | ||| | || |||||||| |||||| Sbjct 424109 ATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATT 424168 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | || | | || | | ||||||||| ||| || | ||||| ||| | Sbjct 424169 ATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATC 424228 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AG 76441 | ||| ||| || |||||| | | || |||||||||| |||| | ||| | | Sbjct 424229 AAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGAT 424287 Query 76442 CTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAA 76497 || || || |||||| || | || || | ||| | | | || | | || Sbjct 424288 AATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAAGTAAACATGGATTAAGAAA 424346 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 |||| | | ||||| ||||||||||| || || ||||||| || || |||||||| Sbjct 424347 TTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAATGA 424406 Query 76558 ATGCTTTGAACCATACACAACAAACATCTA 76587 || |||||||||||| |||| ||||| || Sbjct 424407 ATCCTTTGAACCATATACAAGTAACATTTA 424436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564670843680