Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq553 114 4e-21 >seq553 Length=1089 Score = 114 bits (126), Expect = 4e-21 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1 GGGCGGCGACCTCGCAGATTCTCGCTATTTATGAAAATTTTCAGGCATTTGCCGTTTCCG 60 ||||||||||||||| | || ||||||||||||||||||||| || | | |||||||| Sbjct 879 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 820 Query 61 TTCTTCTTCTCGCTAATTCATTGTTTTAACTGTAAACACCCCCTGAAAAGAAAGGAAATG 120 ||||||||| ||| | | |||||| | | ||| |||| |||||||||||||||| | Sbjct 819 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACG 760 Query 121 A 121 | Sbjct 759 A 759 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 46081 TATGCAATTGATAATTATTATCA-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTACGG 46139 |||| | ||||||| ||||||| ||| |||||||||||||| |||||| | ||||||| Sbjct 938 TATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGG 879 Query 46140 GGCGGCGACCT 46150 ||||||||||| Sbjct 878 GGCGGCGACCT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147557241758784