Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10 221 2e-52 seq6 159 5e-34 seq11 131 2e-25 >seq10 Length=1513010 Score = 221 bits (244), Expect = 2e-52 Identities = 560/842 (67%), Gaps = 17/842 (2%) Strand=Plus/Minus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| | ||| | || || ||||||||||| ||||||| || |||||||| Sbjct 1394756 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1394697 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAA 17982 | ||| || ||||||||| | | | || ||| ||| | ||| Sbjct 1394696 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA 1394637 Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTA 18041 ||||| ||| || |||||||| | ||||| ||||| || || ||||||| || | || Sbjct 1394636 TAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTA 1394578 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 |||||| || ||| ||||||| | | |||| ||||| | ||||| | || Sbjct 1394577 AATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1394518 Query 18102 TGTTTATTAC--CCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 | ||| || ||| || ||| |||||||| | ||||| | ||| || Sbjct 1394517 TATTTTGAACAACCTC--TTCTGGTAATTTATTTTCCAGCAAGCTATAA---ATTAAGCA 1394463 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| |||||||| ||||||||||| || ||||| |||||||| ||||| || Sbjct 1394462 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 1394403 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 | | | || | |||||| | ||||||||| | ||||| | | ||| ||||| Sbjct 1394402 ATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATAT 1394343 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTAT 18339 || || || || || |||| | ||||||||||||| || ||| | ||| Sbjct 1394342 TCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TAT 1394286 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 |||||| ||||||| | ||| || |||||| | || ||||||| ||| Sbjct 1394285 CCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAA 1394226 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 |||| | | ||||| ||| | |||||| | || ||||| ||| ||| |||| Sbjct 1394225 TAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTC 1394166 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519 ||| ||||| |||| | |||||| |||||| ||||||| | | || || ||| Sbjct 1394165 AGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTG 1394106 Query 18520 AATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | || || ||||| || ||| | ||||| || ||||| || ||| || ||| | Sbjct 1394105 TACTTCTCT-TAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAA 1394047 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCA 18637 ||||||| | |||| ||| || ||||| |||||||| | || | ||| ||| | || Sbjct 1394046 AAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTTA-ATTTTTCAAAGTCT 1393988 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 | | ||| |||||| ||| | |||||| | |||||||| || | || || | ||| Sbjct 1393987 TTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTA 1393928 Query 18698 TA 18699 || Sbjct 1393927 TA 1393926 >seq6 Length=831307 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| || |||||||| ||||| | || || ||| || Sbjct 381383 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 381442 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||| ||| |||||| |||||||||||||| || || || || || Sbjct 381443 GATACTATTGAAAACGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 381502 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| |||| |||| ||| || || || | ||||| ||||| ||||| ||||| ||| Sbjct 381503 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGATTACAAT 381562 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| |||||||||||||| ||| Sbjct 381563 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 381610 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| || || |||||||| || || | || || ||| || Sbjct 381155 ATGCAGATTTTCGTAAAAACTTTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 381214 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| |||||||||||||| || ||||| || ||| Sbjct 381215 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCTGATCAA 381274 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| |||||| || || | |||||| ||||| |||| || || || Sbjct 381275 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 381334 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| | || ||||| |||||||||||||| ||| Sbjct 381335 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGT 381382 Score = 129 bits (142), Expect = 9e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 |||||||| ||||| | || || ||| || |||| |||| |||||| ||| |||| Sbjct 380954 GGAAAAACAATTACTCTTGATGTTGAACCATCAGATACTATTGAAAACGTTAAAGCTAAA 381013 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || ||||||||||| |||| || || || || Sbjct 381014 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTCGCTGGAAAACAA 381073 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | || ||| ||||| |||| ||||| ||||| ||||| | || | || ||| Sbjct 381074 TTAGAGGATGGAAGAACACTATCTGATTACAATATTCAAAAAGAATCTACCTTACACTTA 381133 Query 156030 GTGTTAAGATTAAGAGGCGGT 156050 || |||||||||||||| ||| Sbjct 381134 GTTTTAAGATTAAGAGGAGGT 381154 >seq11 Length=1635978 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || |||||||| || || | || || ||| Sbjct 1474747 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1474688 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || ||| ||||| |||||||||||||| || || || || Sbjct 1474687 TCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 1474628 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| |||| || || || || | |||||| ||||| ||||| || ||| Sbjct 1474627 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTAT 1474568 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || |||||| | || | ||||| || Sbjct 1474567 AACATTCAAAAAGAGTCAACCTTACATTTGGT 1474536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865952907600