Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10 268 2e-66 seq6 190 4e-43 seq11 183 6e-41 seq13 86.0 1e-11 >seq10 Length=1513010 Score = 268 bits (296), Expect = 2e-66 Identities = 545/801 (68%), Gaps = 22/801 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 1394712 CTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAA 1394654 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||||| ||||| ||||| | | Sbjct 1394653 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTT 1394594 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1394593 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1394534 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatttaat-atgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || | | | | Sbjct 1394533 ACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCT- 1394475 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| ||||| || |||||| || ||||| || || || ||| || |||||||| Sbjct 1394474 ---ATAAATTAAGCAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATT 1394418 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| ||||||||||| ||||| Sbjct 1394417 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAAC 1394359 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | ||| | | Sbjct 1394358 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGA 1394301 Query 49990 ATT--TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTAT 50047 || |||||| |||||| || ||||| |||||| ||||| || | ||||| Sbjct 1394300 GTTCGTATCAT---TTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTAT 1394244 Query 50048 ATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNAT 50107 |||||| ||||| | |||||| | | | || | || Sbjct 1394243 ATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAAT 1394184 Query 50108 TAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTG 50167 ||||||| ||| ||||||| |||| | ||| | |||||||||||| | |||||| | Sbjct 1394183 TAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTT 1394124 Query 50168 TCTTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 | | ||||| | || || ||||| || ||| | ||||||| || |||| | Sbjct 1394123 TTTGGCTTC-AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTA 1394065 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 | |||||| ||||| || ||||||| || | ||| |||||||| |||||||| | | Sbjct 1394064 TTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACAT 1394005 Query 50287 TTAAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 || |||||| | ||| ||||| ||| |||||||||||| |||||| |||||||| Sbjct 1394004 TT-AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1393947 Query 50345 TGATGCTACGGATTTTTTATA 50365 ||| || | | ||||||||| Sbjct 1393946 TGAGGCCTCAGCTTTTTTATA 1393926 >seq6 Length=831307 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | || || |||||||| |||||||| ||||||| || ||||||||||| Sbjct 381550 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGG 381491 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| |||||| ||| || || |||| |||||| | ||| || Sbjct 381490 GATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| ||||| || ||||||||||| | ||| || ||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| |||| ||||| ||||| |||||| Sbjct 381156 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCA 381097 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| | |||| || |||||||| ||||| || |||||||| |||||||||||| Sbjct 381096 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 381037 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| || || |||| |||||| | ||| Sbjct 381036 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCA 380977 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || |||||||| ||||| || Sbjct 380976 ACATCAAGAGTAATTGTTTTTCC 380954 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| |||||||| | ||||| || || || ||| Sbjct 381384 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 381325 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| || ||||| |||||||| ||||||||||| Sbjct 381324 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 381265 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | ||| Sbjct 381264 GGAATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCA 381205 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || ||||| ||||| | || |||||||| Sbjct 381204 ACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 >seq11 Length=1635978 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| || ||||| ||||||||||||| | |||| Sbjct 1474532 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1474591 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| Sbjct 1474592 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1474651 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | ||| || | ||| || || ||||| || || Sbjct 1474652 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1474711 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1474712 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1474747 >seq13 Length=2809497 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTAT 129767 || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| Sbjct 722338 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTAT 722397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471662377350