Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10 253 4e-62 seq6 190 4e-43 seq11 168 1e-36 seq13 86.0 1e-11 >seq10 Length=1513010 Score = 253 bits (280), Expect = 4e-62 Identities = 568/848 (67%), Gaps = 26/848 (3%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 1394757 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 1394698 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 1394697 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAACAACCTAAACATTCT 1394639 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||||| ||||| |||| | | ||||||| || | | Sbjct 1394638 AATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATT 1394579 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| | Sbjct 1394578 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1394519 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | || || |||||||| || | | | | ||| | ||| || Sbjct 1394518 ATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAGCAAGCT----ATAAATTAAGCA 1394463 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| || ||||| ||||| || ||| || |||||||||||||| ||||| || Sbjct 1394462 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 1394403 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || | | ||||||| ||||||||||| |||||| | | ||| |||| Sbjct 1394402 ATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATA 1394344 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAA 39304 | || || ||||| ||| |||| |||||| | ||| | | || |||||| | Sbjct 1394343 TTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGAGTTCGTATCATTT-- 1394288 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| || ||||| |||||| ||||| || | ||||||||||| ||||| | Sbjct 1394287 -ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATG 1394229 Query 39365 AAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 |||||| || || | ||| Sbjct 1394228 AAATAAATTTAAT--CTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAG 1394171 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||||| |||| | ||| | |||||||||||| | |||||| | | ||||| | Sbjct 1394170 GTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTC-AAT 1394112 Query 39483 TA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 || || ||||| || ||| | ||||||| || |||| || |||||| || Sbjct 1394111 TATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGC 1394052 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 ||| || ||||||| |||| ||| |||||||| |||||||| | ||| |||||| | | Sbjct 1394051 TGCAAAAAATGCTAGCACATGTTTTATAAAATGCTTTTCATTTACATTT-AATTTTTCAA 1393993 Query 39602 AG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || ||||| ||| |||||||||||| |||||| |||||||| || || | | | Sbjct 1393992 AGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1393934 Query 39660 TTTTTATA 39667 |||||||| Sbjct 1393933 TTTTTATA 1393926 >seq6 Length=831307 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| ||||||||||| |||| ||||| |||||| ||||| || Sbjct 381610 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATATTGTAATCAGA 381551 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || |||| || |||||||| |||||||||||||||| || || |||||||| Sbjct 381550 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGCTGATCAGGTGG 381491 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| ||| || || ||||||||||| | ||| || Sbjct 381490 GATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 381431 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| ||||| || ||||||||||| | || || ||||| Sbjct 381430 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 381383 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| ||||| |||| ||||| |||||| ||||| Sbjct 381156 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATATTGTAATCA 381097 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | | || || |||||||| ||||| ||||||||||| ||||| |||||| Sbjct 381096 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 381037 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| || || ||||||||||| | ||| Sbjct 381036 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCA 380977 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || |||||||| ||||| || Sbjct 380976 ACATCAAGAGTAATTGTTTTTCC 380954 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| |||||||| | ||||| ||| || || || Sbjct 381384 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 381325 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| || |||||||||||||| ||||| ||||| Sbjct 381324 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 381265 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| || ||||| || | ||| Sbjct 381264 GGAATACCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCGGATGGTTCA 381205 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || ||||| ||||| | ||| |||||||| Sbjct 381204 ACATCAAGAGTGATTGTTTTTCCGGTTAAAGTTTTTACGAAAATCTGCAT 381155 >seq11 Length=1635978 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||| ||||| || ||||| | || | | || Sbjct 1474532 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1474591 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1474592 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1474651 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| || ||||| || | ||| || || ||||| || || Sbjct 1474652 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1474711 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 1474712 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1474747 >seq13 Length=2809497 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTAT 109180 || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| Sbjct 722338 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTAT 722397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128521313800