Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 199 1e-45 seq13 149 2e-30 seq7 116 1e-20 seq9 113 1e-19 seq10 84.2 6e-11 >seq6 Length=831307 Score = 199 bits (220), Expect = 1e-45 Identities = 785/1221 (64%), Gaps = 28/1221 (2%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || | |||| | | |||||| || | Sbjct 424183 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTT 424124 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 424123 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 424069 Query 155426 AATACCGACTGGGCGATGCCTGTAATT-GCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAA 155483 || || | || | |||||| | ||| | || | | |||||| ||| ||| || Sbjct 424068 TATTCCAATAGGTCTATGCCTTTTATTTGATCTTTCAG--CTTCTTTAACTGGATAATAA 424011 Query 155484 TTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTC 155543 || |||||||| |||| ||||||| || | | || || | || |||||| Sbjct 424010 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 423951 Query 155544 ACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCCAGA 155600 | | | |||| |||| | ||| || ||||| | | | |||| ||||| | | Sbjct 423950 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGACGCTAAA 423891 Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGTTAG 155658 ||||| || || || | | || | ||||| || | ||| ||||| || | ||| Sbjct 423890 TTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATAATTTCACAACATAAATTAC 423833 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 || || || || |||||||| || ||||| |||||| ||||| ||||| || |||| Sbjct 423832 TACATTTAATTGTTCCTAAATTTTTTTGGTTCGATTTAGAATTACATGCATCTTTATATA 423773 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 || ||||| || || || || || | | || | ||| | || | | Sbjct 423772 ACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTG 423713 Query 155779 CATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAAT 155838 || || | || ||| | ||| || ||||| |||| | || | | Sbjct 423712 CAAGAACTGTTTTTTTGCCTAAATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATT 423653 Query 155839 CCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTT 155898 | ||||| || ||||| | || || || | || ||||| | | | ||| | | Sbjct 423652 CTTCACCCCAAGTTTCACTTAAGCCTGGACATTCATTAGGGCACATTAAAGTCCAGTTCT 423593 Query 155899 TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCC 155958 |||| | |||| | | |||||||| |||| ||||||||||||| || | || | Sbjct 423592 TATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCAC 423533 Query 155959 TTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAG 156018 || | | || || | || ||||| || | || ||||| ||||| |||||| | Sbjct 423532 GAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTG 423473 Query 156019 GATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTA 156075 ||| ||| || | ||| | ||||||| ||| || || || ||||| ||||||| Sbjct 423472 AATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTA 423413 Query 156076 CATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCAT 156135 |||| | || || | ||| || || | || ||| |||| | |||||| || | |||| Sbjct 423412 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGATATACCAT 423353 Query 156136 TGGTTCCGCGAATATGCGAACCAGATGA--GCGAACATTATGAATATGTAGTCCAATACC 156193 | ||||| | || | ||| ||| | || || || | | | || ||||| Sbjct 423352 TAGTTCCTCTGATGTAAGAA--TTTTGACCTCTAATATCTTGTACAGCCACACCTATACC 423295 Query 156194 ACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGA 156253 |||| |||| ||| || |||| ||||| || | || |||||||| || || Sbjct 423294 TCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGA 423235 Query 156254 ATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTT 156313 |||| || |||||||| || | |||| ||| | ||| |||| ||||||||| | || Sbjct 423234 ATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATT 423175 Query 156314 GAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTT 156373 |||| |||||| || |||||| |||| || || | ||||| ||| ||||| || Sbjct 423174 AAATAATGTAGGAGTAGCATGAGTAAAGTATTTTTGTGACATTAAATGATATGTTTCTAA 423115 Query 156374 AATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGG 156433 | ||| ||||||| | || || | ||||| || ||||| | | ||| ||||| Sbjct 423114 AGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGG 423055 Query 156434 ACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCC 156493 ||| || | ||| || ||| || | | ||| | | ||| | |||||||| || Sbjct 423054 ACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCC 422995 Query 156494 GAAATAATCAAACAGAAAATC 156514 ||||||||| | |||||| Sbjct 422994 AAAATAATCATAATTAAAATC 422974 >seq13 Length=2809497 Score = 149 bits (164), Expect = 2e-30 Identities = 234/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| ||| || ||||| ||||| ||||| |||| | ||| || | || | | Sbjct 1123657 CTTCTTTTAGAACCTACTGCATCTATTTCATCAATAAAAACAATACAAGGTGCATGCTTT 1123716 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | ||| || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1123717 TTTGCAGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1123776 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||| ||||| | ||||| || Sbjct 1123777 AATTCTGAACCAGATGCTTGGATAAAGGGTACATTTGCTTCCCCTGCAATAGCCCTAGCA 1123836 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 1123837 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 1123896 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1123897 CCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1123956 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| |||||| || ||||| Sbjct 1123957 TTTACTTCATCACATCCTTTTACATCTGCTAAAGT 1123991 >seq7 Length=1057013 Score = 116 bits (128), Expect = 1e-20 Identities = 273/404 (68%), Gaps = 21/404 (5%) Strand=Plus/Plus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 915621 AATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTT 915680 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| ||||| | ||||| |||||||||||||| ||||| || ||| || Sbjct 915681 CATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCT 915740 Query 381082 GATTATGATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| | | | || || |||||||| | ||| ||||| || || ||||| |||| Sbjct 915741 GAATAT-ACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAACTAAAAAATAT 915799 Query 381141 CATAGACC-AGCTAAAAA--ATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGC 381197 ||| | | |||||| |||| ||| | | | ||| | ||| | ||| Sbjct 915800 TATAAATTTAATTAAAAACGATCCG---ACATGTA------GACGAATTATTTTATGTGC 915850 Query 381198 GTGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAG 381255 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || Sbjct 915851 ATGGAATG--TAAAAGATTTAGATCAAATGGCATTACCCCCTTGTCATATTTTATGTCAA 915908 Query 381256 TTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTT 381315 || |||||| | ||| || ||| ||| | | ||||| | ||||| | Sbjct 915909 TTTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAAAGATCTTGTGATTTA 915965 Query 381316 GGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 915966 GGTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTAC 916009 >seq9 Length=1302257 Score = 113 bits (124), Expect = 1e-19 Identities = 321/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| ||| |||||| || Sbjct 544164 CTATCAAATCTTCCTGGTCTTGTAATAGCGGGATCTAAAATATCGATTCTATTTGTTCCT 544223 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || || || | Sbjct 544224 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCAACAAGCATCT 544281 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 544282 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTTGATCTTT 544341 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 || | ||||||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 544342 TTCGT-CCAACAGCATCAATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 544400 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||||||||||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 544401 TGTGCAAATAATTCTCTAACTCTTGATGGTCCGATTCCCACAAATACTTCAATAAAATCA 544460 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 544461 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCACCAGCAACAGCTTTTGCTAATA 544518 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 || || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 544519 AAGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 544577 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| |||||| | || | || ||||| || |||| ||| || ||| | |||| Sbjct 544578 AATACTTGATATTTTGCTGGATTTTTCAAAAAATCAACAAACTCCATAATTTCTTCTTTT 544637 Query 289321 GC 289322 || Sbjct 544638 GC 544639 >seq10 Length=1513010 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 292422 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 292364 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 292363 AAACCCACATGGATCATT 292346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805135084757